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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactgtgttgtctgtattaataagaactgttgtgatcctttatcaacctgatcttacgtacaaatcccaagacctcaggtacaaaattgttttggattgtaaatataaaaaatgtttatacacatttgtcgtgttatcatgccagGTGTGGAAGATGTAAATTGCAAAATGTCAAGGTATTGAACAAGGGAATTGATTGGACTTGCGATGAAAACATATACTGGAAACATGATGTGCAGCGATCT

Basic information

species Glycine max
transcript GLYMA11G35520.1
intron # 15
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G35520.1 (Glycine max), 3'ss of exon 15
lower sequence: Vv13s0067g01470.t01 (Vitis vinifera), 3'ss of exon 14
gtactgtgttgtctgtattaataagaactgttgtgatcctttatcaacctgatcttacgtacaaatcccaagacctcaggtacaaaattgttttggattgtaaatataaaaaatgtttatacacatttgtcgtgttatcatgccagGTGTGGAAGATGTAAATTGCAAAATGTCAAGGTATTGAACAAGGGAATTGATTGGACTTGCGATGAAAACATATACTGGAAACATGATGTGCAGCGATCT
                                                      | |  | |   ||||   |  |||   | ||   | || || |   |  | || |||  || ||   |||   ||  ||   |   ||  ||||||||||||||||| |||||||| ||||| |||  |||||| |||||| | |||| ||  | ||| || ||||| ||||| ||||||||||| || | |
-----------------------------------------------------gtaatatgctgttcccgtaatttcaaaaataa---ttttctgaacaatggaaattaaatttgatttatcacgaatga-gttcaactgtgt-agGTGTGGAAGATGTAAGTTGCAAAACGTCAAAGTACAGAACAAAGGAATTAACTGGAATTCTGGTGACAATATATATTGGAAGCATGATGTGCAACGGTTT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17020878|gb|BM091912.1|BM091912
EST:     TCAATGAAGATTAATGAGAACAGTGAATCCATACTACATTATGGCCAAAG                         GTGTGGAAGATGTAAATTGCAAAATGTCAAGGTATTGAACAAGGGAATTGA
genomic: TCAATGAAGATTAATGAGAACAGTGAATCCATACTACATTATGGCCAAAGgtactgtgtt ... atcatgccagGTGTGGAAGATGTAAATTGCAAAATGTCAAGGTATTGAACAAGGGAATTGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttggattgtaaatataaaaaatgtttatacacatttgtcgtgttatcatgccagGTGTGGAAGATGTAAATTGCAAAATGTCAAGGTATTGAACAAGGGAATTGATTGGACTTGCGATGAAAACATATACTGGAAACATGATGTGCAGCGATCT
     attgtaaatataaaaa  TA-rich tract