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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatgacttgtatcaatactttgcaatttcatactataatgcaactccaggtcttctgtataatttttccctctattccagGTTATTGTAATTGTGGATGCATCGGAAGCAGAAGAGTTCTCTGAAGTGTTCTCAAAGCCTCTCAGATCTCTTCCTTATGATTCGCCTGGGCAAACATTTG

Basic information

species Glycine max
transcript GLYMA11G12610.2
intron # 15
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA11G12610.1 (Glycine max), 3'ss of exon 15
lower sequence: Vv03s0063g02450.t01 (Vitis vinifera), 3'ss of exon 15
gtaatgacttgtatcaatactttgcaattt-catactataatgcaactccaggtcttctgtataatttttcc---ctctattccagGTTATTGTAATTGTGGATGCATCGGAAGCAGAAGAGTTCTCTGAAGTGTTCTCAAAGCCTCTCAGATCTCTTCCTTATGATTCGCCTGGGCAAACATTTG
||||||||   | |  |     |||| ||    |  | | |    ||||  |   | |  | ||| |||||    ||   |  ||||| | ||| || |||||||| || || ||||| || ||||| ||||| |   | ||||| || |||||||||||||||||||| || || ||||||||||
gtaatgaccaatttagaacagctgcacttcatgttttctgaccttactcgggacttccattgtaacttttctatacttgttggcagGTCACTGTTATCGTGGATGCTTCAGATGCAGAGGAATTCTCCGAAGTATCAACCAAGCCCCTAAGATCTCTTCCTTATGATTCACCAGGACAAACATTTG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttcatactataatgcaactccaggtcttctgtataatttttccctctattccagGTTATTGTAATTGTGGATGCATCGGAAGCAGAAGAGTTCTCTGAAGTGTTCTCAAAGCCTCTCAGATCTCTTCCTTATGATTCGCCTGGGCAAACATTTG
                                     tttttccctctattcc  CT-rich tract
                           ttctgtataattttt  TA-rich tract