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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattttctccccttgataaccgatgtgggtttattttttaacggtgatttatgccgacataattctgtataaatgatgattgaatatttaataatatggaggcggtgaagatttgttggtacggtaactgataatctaaacagttatgtatagttaattggttgatttatttgatggtgtcttgtcttttctcagACCATCGAGACTTTGTCAGGTGTCCTGGCGCCAGAATTAGCATTGCAGTTGTACTTGCAATGTGCTGAG

Basic information

species Glycine max
transcript GLYMA11G08390.1
intron # 15
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15204547|gb|BI427315.1|BI427315
EST:     GAGATGATGCATCAACAACACCAAAGAAAATTTTTCAGCTTTTAAATCAG                         ACCATCGAGACTTTGTCAGGTGTCCTGGCGCCAGAATTAGCATTGCAGTTG
genomic: GAGATGATGCATCAACAACACCAAAGAAAATTTTTCAGCTTTTAAATCAGgtaattttct ... cttttctcagACCATCGAGACTTTGTCAGGTGTCCTGGCGCCAGAATTAGCATTGCAGTTG
EST: gi|192323264|gb|FK015270.1|FK015270
EST:     GAGATGATGCATCAACAACACCAAAGAAAATTTTTCAGCTTTTAAATCAG                         ACCATCGAGACTTTGTCAGGTGTCCTGGCACCAGAATTAGCATTGCAGTTG
genomic: GAGATGATGCATCAACAACACCAAAGAAAATTTTTCAGCTTTTAAATCAGgtaattttct ... cttttctcagACCATCGAGACTTTGTCAGGTGTCCTGGCGCCAGAATTAGCATTGCAGTTG
EST: gi|193716713|gb|FK654271.1|FK654271
EST:     AACAAC-CAAAAGAAAAATTTTTCTAGCTTTTAAATCAG                         ACCATCGAGACTTTGTCAGGTGTCCTGGCGCCAGAATTAGCATTGCAGTTG
genomic: AACAACACCAAAG-AAAATTTTTC-AGCTTTTAAATCAGgtaattttct ... cttttctcagACCATCGAGACTTTGTCAGGTGTCCTGGCGCCAGAATTAGCATTGCAGTTG
EST: gi|12773342|gb|BG238269.1|BG238269
EST:     GATATGATGCATCAACAACACCAAAGAAAATTTTTCAGCTTTTAAATCAG                         ACCATCGAGACTTTGTCAGGTGTCCTGGCGCCAGAATTAGCATTGCAGTTG
genomic: GAGATGATGCATCAACAACACCAAAGAAAATTTTTCAGCTTTTAAATCAGgtaattttct ... cttttctcagACCATCGAGACTTTGTCAGGTGTCCTGGCGCCAGAATTAGCATTGCAGTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cagttatgtatagttaattggttgatttatttgatggtgtcttgtcttttctcagACCATCGAGACTTTGTCAGGTGTCCTGGCGCCAGAATTAGCATTGCAGTTGTACTTGCAATGTGCTGAG
                                     tgtcttgtcttttctc  CT-rich tract
     atgtatagttaatt  TA-rich tract