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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctttgattatagtgttatttaaatcattcaactgtcgctcactgacaatagaatactaattcttatggcatttaataagtgcttgatgtttctcgtccagGCACCATATCAGACCAAGTTGATTGACCTGAACCTTCTATGTCCTGAGGAGATAGATTGGCTGAACTCGTATCACTCCACATGCAGAGATATTCTAGCGC

Basic information

species Glycine max
transcript GLYMA11G06900.1
intron # 15
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|254314276|gb|GR831905.1|GR831905
EST:     ATTTCAATTTTGGTGATAGAGGTTACTTATCTTTTGAACACATTACCTGG                         GCACCATATCAGACCAAGTTGATTGACCTGAACCTTCTATGTCCTGAGGAG
genomic: ATTTCAATTTTGGTGATAGAGGTTACTTATCTTTTGAACACATTACCTGGgtaagttcta ... tctcgtccagGCACCATATCAGACCAAGTTGATTGACCTGAACCTTCTATGTCCTGAGGAG
EST: gi|208325405|gb|GE118429.1|GE118429
EST:     ATTTCAATTTTGGTGATAGAGGTTACTTATCTTTTGAACACATTACCTGG                         GCACCATATCAGACCAAGTTGATTGACCTGAACCTTCTAATGTCCTGAGGA
genomic: ATTTCAATTTTGGTGATAGAGGTTACTTATCTTTTGAACACATTACCTGGgtaagttcta ... tctcgtccagGCACCATATCAGACCAAGTTGATTGACCTGAACCTTCTA-TGTCCTGAGGA
EST: gi|33389033|gb|CA852240.1|CA852240
EST:     ATTTCAATTTTGGTGATAGAGGTTACTTATCTTTTGAACACATTACCTGG                         GCACCATATCAGACCAAGTTGATTGACCTGAACCTTCTATGTCCTGAGGAG
genomic: ATTTCAATTTTGGTGATAGAGGTTACTTATCTTTTGAACACATTACCTGGgtaagttcta ... tctcgtccagGCACCATATCAGACCAAGTTGATTGACCTGAACCTTCTATGTCCTGAGGAG
EST: gi|15814619|gb|BI786894.1|BI786894
EST:     ATTTCAATTTTGGTGATAGAGGTTACTTATCTTTTGAACACATTACCTGG                         GCACCATATCAGACCAAGTTGATTGACCTGAACCTTCTATGTCCTGAGGAG
genomic: ATTTCAATTTTGGTGATAGAGGTTACTTATCTTTTGAACACATTACCTGGgtaagttcta ... tctcgtccagGCACCATATCAGACCAAGTTGATTGACCTGAACCTTCTATGTCCTGAGGAG
EST: gi|18712538|gb|BM522652.1|BM522652
EST:     CACATTACCTGG                         GCACCATATCAGACCAAGTTGATTGACCTGAACCTTCTATGTCCTGAGGAG
genomic: CACATTACCTGGgtaagttcta ... tctcgtccagGCACCATATCAGACCAAGTTGATTGACCTGAACCTTCTATGTCCTGAGGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caatagaatactaattcttatggcatttaataagtgcttgatgtttctcgtccagGCACCATATCAGACCAAGTTGATTGACCTGAACCTTCTATGTCCTGAGGAGATAGATTGGCTGAACTCGTATCACTCCACATGCAGAGATATTCTAGCGC
                                           tttctcgtcc  CT-rich tract
      aatactaattcttat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ctttgattatagtgttatttaaatcattcaactgtcgctcactgacaatagaatactaattcttatggcatttaataagtgcttgatgtttctcgtccagGCACCATATCAGACCAAGTTGATTGACCTGAACCTTCTATGTCCTGAGGAGATAGATTGGCTGAACTCGTATCACTCCACATGCAGAGATATTCTAGCGC

- - - - - - - - - - - - cattcaa
- - - - - - - - - - - - - - - - - -cgctcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggcattt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcttga