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...aaggtgacatttactctcatggttctcactgtctgactagaaatgtgtgctttgtattactgaaacatgccttccatgtgaatttactcttcgtggacagGCTTGGCTGACATATTTTTGGAGAAGAGCCAAAGCTCATGGTATAGAGGAGGAAATTGCTGAAGAACGTCTTCGGTTTTGGATTAGTCGGAGTGGGCATT
species | Glycine max |
transcript | GLYMA10G44630.1 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: AATTGAGTCCAGAGGAATCTGAGGATGTTCTTTTTCAAGGAG GCTTGGCTGACATATTTTTTGGAGAAGAGCCAAAGCTCATGGTATAGAGGAEST: gi|57573966|gb|CX546941.1|CX546941
genomic: AATTGAGTCCAGAGGAATCTGAGGATGTTC-TTTTCAAGGAGgtattctgtt ... tcgtggacagGCTTGGCTGACATA-TTTTTGGAGAAGAGCCAAAGCTCATGGTATAGAGGA
EST: AATTGAGTCCAGAGGAATCTGAGGATGTTCTTTTCAAGGAG GCTTGGCTGACATATTTTTGGAGAAGAGCCAAAGCTCATGGTATAGAGGAGEST: gi|58015739|gb|CX702481.1|CX702481
genomic: AATTGAGTCCAGAGGAATCTGAGGATGTTCTTTTCAAGGAGgtattctgtt ... tcgtggacagGCTTGGCTGACATATTTTTGGAGAAGAGCCAAAGCTCATGGTATAGAGGAG
EST: AATTGAGTCCAGAGGAATCTGAGGATGTTCTTTTCAAGGAG GCTTGGCTGACATATTTTTGGAGAAGAGCCAAAGCTCATGGTATAGAGGAGEST: gi|21676058|gb|BQ628409.1|BQ628409
genomic: AATTGAGTCCAGAGGAATCTGAGGATGTTCTTTTCAAGGAGgtattctgtt ... tcgtggacagGCTTGGCTGACATATTTTTGGAGAAGAGCCAAAGCTCATGGTATAGAGGAG
EST: AATTGAGTCCAGAGGAATCTGAGGATGTTCTTTTCAAGGAG GCTTGGCTGACATATTTTTGGAGAAGAGCCAAAGCTCATGGTATAGAGGAGEST: gi|18690854|gb|BM519710.1|BM519710
genomic: AATTGAGTCCAGAGGAATCTGAGGATGTTCTTTTCAAGGAGgtattctgtt ... tcgtggacagGCTTGGCTGACATATTTTTGGAGAAGAGCCAAAGCTCATGGTATAGAGGAG
EST: AATTGAGTCCAGAGGAATCTGAGGATGTTCTTTTCAAGGAG GCTTGGCTGACATATTTTTGGAGAAGAGCCAAAGCTCATGGTATAGAGGAGEST: gi|58018947|gb|CX705689.1|CX705689
genomic: AATTGAGTCCAGAGGAATCTGAGGATGTTCTTTTCAAGGAGgtattctgtt ... tcgtggacagGCTTGGCTGACATATTTTTGGAGAAGAGCCAAAGCTCATGGTATAGAGGAG
EST: AATTGAGTCCAGAGGAATCTGAGGATGTTCTTTTCAAGGAG GCTTGGCTGACATATTTTTGGAGAAGAGCCAAAGCTCATGGTATAGAGGAG
genomic: AATTGAGTCCAGAGGAATCTGAGGATGTTCTTTTCAAGGAGgtattctgtt ... tcgtggacagGCTTGGCTGACATATTTTTGGAGAAGAGCCAAAGCTCATGGTATAGAGGAG
tgtgctttgtattactgaaacatgccttccatgtgaatttactcttcgtggacagGCTTGGCTGACATATTTTTGGAGAAGAGCCAAAGCTCATGGTATAGAGGAGGAAATTGCTGAAGAACGTCTTCGGTTTTGGATTAGTCGGAGTGGGCATT
tttactcttc CT-rich tract
tttgtatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaggtgacatttactctcatggttctcactgtctgactagaaatgtgtgctttgtattactgaaacatgccttccatgtgaatttactcttcgtggacagGCTTGGCTGACATATTTTTGGAGAAGAGCCAAAGCTCATGGTATAGAGGAGGAAATTGCTGAAGAACGTCTTCGGTTTTGGATTAGTCGGAGTGGGCATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - -ctcatgg
- - - - - - - - - - - - ctcactg
- - - - - - - - - - - - - - - - ctgacta
- - - - - - - - - - - - - - - - - - - - - -tgtgtgc