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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttctgactacaatttttgttcatttacccttaatgaattgattcaattacttgatttattttaaatttatataaatctgaaatttggtttactaaacttttatgatagGAGGCTGCTGAAGAGTTGGCACCACGCTTGGAAATTATACTAAAGCACCTAATGACTGCATTTGGGAAATATCAG

Basic information

species Glycine max
transcript GLYMA10G42960.1
intron # 15
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G42960.1 (Glycine max), 3'ss of exon 15
lower sequence: Vv03s0038g02830.t01 (Vitis vinifera), 3'ss of exon 15
gttctgactacaatttttgttcatttacccttaatgaattgattcaattacttgatttattttaaatttatataaatctgaaatttggtttactaaacttttatgatagGAGGCTGCTGAAGAGTTGGCACCACGCTTGGAAATTATACTAAAGCACCTAATGACTGCATTTGGGAAATATCAG
             ||| ||||  | | |    | || | | |||  ||| ||   ||||    | || | | || |||  ||   || ||   | |  |   ||   |||||||||| ||| |||| ||||||| |||||||||||| ||| | |||||||||  ||| |||||||| || |||
------------gtttctgttattatgc----agtgtaattattacatttctgtctttag---atatatctctagatcccaa---tgattgtttgatttaccat--cagGAGGCTGCAGAAAAGTTAGCACCACACTTGGAAATTATTCTACAACACCTAATGTGTGCTTTTGGGAAGTACCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192327364|gb|FK019581.1|FK019581
EST:     ATAAGCGGGTTCAAGAGGCTGCTTGTTCAGCTTTTGCAACGCTGGAAGAG                         GAGGCTGCTGAAGAGTTGGCACCACGCTTGGAAATTATACTAAAGCACCTA
genomic: ATAAGCGGGTTCAAGAGGCTGCTTGTTCAGCTTTTGCAACGCTGGAAGAGgttctgacta ... tttatgatagGAGGCTGCTGAAGAGTTGGCACCACGCTTGGAAATTATACTAAAGCACCTA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttattttaaatttatataaatctgaaatttggtttactaaacttttatgatagGAGGCTGCTGAAGAGTTGGCACCACGCTTGGAAATTATACTAAAGCACCTAATGACTGCATTTGGGAAATATCAG
                                    tactaaa  putative branch site (score: 1)
                                           cttttat  CT-rich tract
     ttttaaatttatataa  TA-rich tract