Sequence
atgc intronic sequence ATGC exonic sequencegtaagatggaaatatattttttgatttgtggtttgcttccagtgtggaataccattaggtggattttgtcttgtttctatgaggctgtatcttgtttgtcagATGTTTACTCAACTGCGCTTCACATATGAACAAGAGAGTCATCCAGAGGAGTTTTTTATCCCATATGTCTGGCAGCTAGTGCTATCCCGTTG
Basic information
species | Glycine max |
transcript | GLYMA10G38920.2 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA10G38920.2 (Glycine max), 3'ss of exon 15
lower sequence: LOC_Os01g56630.2 (Oryza sativa), 3'ss of exon 15
------------------------------gtaagatggaaatatattttttgatttgtggtttgcttccagtgtgg---------aataccattaggtggattttgtcttgtttc-tatgaggctgtatcttgtttgtcagATGTTTACTCAACTGCGCTTCACATATGAACAAGAGAGTCATCCAGAGGAGTTTTTTATCCCATATGTCTGGCAGCTAGTGCTATCCCGTTG
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gtgatgcttataatacttagaaactgctgctttaaatggcagt-tctttgatgattgcacattttcttgttctttgagcacttgaaaatattctggtgtccggattgattggcttgacaatatataatgatctgttt-tcagATGTTTACCCAGTTACGGTTTACATATGAGCAAGAAAGTCATCCTGAGGAGTTTTTTATCCCATATGCATGGCGCGTTGTCCTATCACGAGG
upper sequence: GLYMA10G38920.2 (Glycine max), 3'ss of exon 15
lower sequence: GRMZM2G078576_T04 (Zea mays), 3'ss of exon 15
--gtaagatggaaatatattttttgatttgtggtttgcttccagtgtggaataccattaggtggattttgtcttgtttctatgaggctgtatcttgtttgtcagATGTTTACTCAACTGCGCTTCACATATGAACAAGAGAGTCATCCAGAGGAGTTTTTTATCCCATATGTCTGGCAGCTAGTGCTATCCCGTTG
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atctaaaatg-aattttaattttggacagagggagtatttatgatg-gcaagatattctggcaa--taagattgactgacaatgtactttgaattatttttcagATGTTTACTCAGTTGCGGTTTACATATGAGCAAGAAAGCCACCCTGAGGAATTCTTTATCCCATATGCATGGCGCCTTGTCCTGTCACGGGG
upper sequence: GLYMA10G38920.2 (Glycine max), 3'ss of exon 15
lower sequence: AT1G04200.1 (Arabidopsis thaliana), 3'ss of exon 15
----gtaagatggaaatatattttttgatttgtggtttgcttccagtgtggaataccat--taggtggattttgtcttgtttctatgaggctgtatcttgtttgt-cagATGTTTACTCAACTGCGCTTCACATATGAACAAGAGAGTCATCCAGAGGAGTTTTTTATCCCATATGTCTGGCAGCTAGTGCTATCCCGTTG
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gtaagcaacctctacacatatccatcactgaaatatttgaatcctttcccggtagctatagttgttaaaagctcttatctttcttccacttttctttttgttaccgcagATGTTTACTCAGCTTCACTTCTCATATGAACAAGAGAGCCACCCGGAAGAGTTTTTTATTCCATATGTTTGGCAACTAGCTTTTTCCCGATG
upper sequence: GLYMA10G38920.2 (Glycine max), 3'ss of exon 15
lower sequence: Vv05s0020g04100.t01 (Vitis vinifera), 3'ss of exon 15
gtaagatggaaatatattttttg-atttgtggtttgcttccagtgtggaataccattaggtggattttgtcttgtttctatgaggctgta---tcttgtttgtcagATGTTTACTCAACTGCGCTTCACATATGAACAAGAGAGTCATCCAGAGGAGTTTTTTATCCCATATGTCTGGCAGCTAGTGCTATCCCGTTG
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gtaaaaggcaattggttgttgagcaattacagtt-gttccaattaatgaatcttatctgaaaggttatgttccacttatcacgtaatataaatttccgtttgacagATGTTTACACAATTACGCTTCACATATGAACAAGAGAGCCATCCAGAGGAGTTCTTTATCCCCTATGTGTGGCAGCTAGTTCTATCCCGCTGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|151393515|gb|EV263390.1|EV263390EST: TACAAGTCATAATTGTCAATTGTCGTTCTTGGAGGGGTGATGGAATGAAG ATGTTTACTCAACTGCGCTTCACATATGAACAAGAGAGTCATC
genomic: TACAAGTCATAATTGTCAATTGTCGTTCTTGGAGGGGTGATGGAATGAAGgtaagatgga ... tgtttgtcagATGTTTACTCAACTGCGCTTCACATATGAACAAGAGAGTCATC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aataccattaggtggattttgtcttgtttctatgaggctgtatcttgtttgtcagATGTTTACTCAACTGCGCTTCACATATGAACAAGAGAGTCATCCAGAGGAGTTTTTTATCCCATATGTCTGGCAGCTAGTGCTATCCCGTTG
tcttgttt CT-rich tract
attttgt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagatggaaatatattttttgatttgtggtttgcttccagtgtggaataccattaggtggattttgtcttgtttctatgaggctgtatcttgtttgtcagATGTTTACTCAACTGCGCTTCACATATGAACAAGAGAGTCATCCAGAGGAGTTTTTTATCCCATATGTCTGGCAGCTAGTGCTATCCCGTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT