1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
...tttgtgtttgtgtgcattttggggatttcttttttatttttctcttgcaattcaatttggagcaattttttatgttgagtattttgttataattctgcagGGTTTCTGCCCAGGATTAAATCATGGACAGAAGTTTGGTATATTATATGCCTATCCAACTGATGAACGTCATGATTATGAAACCAACCAAGTCCAACAGA
species | Glycine max |
transcript | GLYMA10G32320.1 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: CTTCGGACTACACTACTGTTGAGCCAAGTGCTGTTTCAGGTTTGATCAAG GGTTTCTGCCCAGGATTAAATCATGGACAGAAGTTTGGTATATTATATGCCEST: gi|22933002|gb|BU550141.1|BU550141
genomic: CTTCGGACTACACTACTGTTGAGCCAAGTGCTGTTTCAGGTTTGATCAAGgtactcttta ... aattctgcagGGTTTCTGCCCAGGATTAAATCATGGACAGAAGTTTGGTATATTATATGCC
EST: GGACTACACTACTGTTGAGCCAAGTGCTGTTTCAGGTTTGATCAAG GGTTTCTGCCCAGGATTAAATCATGGACAGAAGNNNGGTATATTATATGCCEST: gi|9565025|gb|BE474534.1|BE474534
genomic: GGACTACACTACTGTTGAGCCAAGTGCTGTTTCAGGTTTGATCAAGgtactcttta ... aattctgcagGGTTTCTGCCCAGGATTAAATCATGGACAGAAGTTTGGTATATTATATGCC
EST: CTTCGGACTACACTACTGTTGAGCCAAGTGCTGTTTCAGGTTTGATCAAG GGTTTCTGCCCAGGATTAAATCATGGACAGAAGTTTGGTATATTATATGCCEST: gi|58019525|gb|CX706267.1|CX706267
genomic: CTTCGGACTACACTACTGTTGAGCCAAGTGCTGTTTCAGGTTTGATCAAGgtactcttta ... aattctgcagGGTTTCTGCCCAGGATTAAATCATGGACAGAAGTTTGGTATATTATATGCC
EST: CTTCGGACTACACTACTGTTGAGCCAAGTGCTGTTTCAGGTTTGATCAAG GGTTTCTGCCCAGGATTAAATCATGGACAGAAGTTTGGTATATTATATGCCEST: gi|51335334|gb|CO979200.1|CO979200
genomic: CTTCGGACTACACTACTGTTGAGCCAAGTGCTGTTTCAGGTTTGATCAAGgtactcttta ... aattctgcagGGTTTCTGCCCAGGATTAAATCATGGACAGAAGTTTGGTATATTATATGCC
EST: CTTCGGACTACACTACTGTTGAGCCAAGTGCTGTTTCAGGTTTGATCAAG GGTTTCTGCCCAGGATTAAATCATGGACAGAAGTTTGGTATATTATATGCC
genomic: CTTCGGACTACACTACTGTTGAGCCAAGTGCTGTTTCAGGTTTGATCAAGgtactcttta ... aattctgcagGGTTTCTGCCCAGGATTAAATCATGGACAGAAGTTTGGTATATTATATGCC
tgcaattcaatttggagcaattttttatgttgagtattttgttataattctgcagGGTTTCTGCCCAGGATTAAATCATGGACAGAAGTTTGGTATATTATATGCCTATCCAACTGATGAACGTCATGATTATGAAACCAACCAAGTCCAACAGA
aattttttatgttgag TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttgtgtttgtgtgcattttggggatttcttttttatttttctcttgcaattcaatttggagcaattttttatgttgagtattttgttataattctgcagGGTTTCTGCCCAGGATTAAATCATGGACAGAAGTTTGGTATATTATATGCCTATCCAACTGATGAACGTCATGATTATGAAACCAACCAAGTCCAACAGA
- - tgtttgt
- - - - - - tgcattt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttgag