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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatggcttccggttctatgttgtatacatgttttgaatgagcatgataccatatatactacttgacatgttaaactttattggttatcatcgtttagGCATCAGATGGGAATCTTGGACCGAAAGAATGCATTCTTTTACTTGGATGGCGCCCTGAGGCTGTAGAAATGATTCAAGAGTATGATAACTATCTTGGTC

Basic information

species Glycine max
transcript GLYMA10G32300.1
intron # 15
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|17154053|gb|BM143986.1|BM143986
EST:     AAGTAAGGCTTGCTAATATTGTAAAACGGCCTAATAGATCAGGTTCCAAG                         GCATCAGATGGGAATCTTGGACCGAAAGAATGCATTCTTTTACTTGGATGG
genomic: AAGTAAGGCTTGCTAATATTGTAAAACGGCCTAATAGATCAGGTTCCAAGgtatggcttc ... catcgtttagGCATCAGATGGGAATCTTGGACCGAAAGAATGCATTCTTTTACTTGGATGG
EST: gi|7232224|gb|AW567581.1|AW567581
EST:     AAGTAAGGCTTGCTAATATTGTAAAACGGCCTAATAGATCAGGTTCCAAG                         GCATCAGATGGGAATCTTGGACCGAAAGAATGCATTCTTTTACTTGGATGG
genomic: AAGTAAGGCTTGCTAATATTGTAAAACGGCCTAATAGATCAGGTTCCAAGgtatggcttc ... catcgtttagGCATCAGATGGGAATCTTGGACCGAAAGAATGCATTCTTTTACTTGGATGG
EST: gi|7283657|gb|AW596261.1|AW596261
EST:     AAGTAAGGCTTGCTAATATTGTAAAACGGCCTAATAGATCAGGTTCCAAG                         GCATCAGATGGGAATCTTGGACCGAAAGAATGCATTCTTTTACTTGGATGG
genomic: AAGTAAGGCTTGCTAATATTGTAAAACGGCCTAATAGATCAGGTTCCAAGgtatggcttc ... catcgtttagGCATCAGATGGGAATCTTGGACCGAAAGAATGCATTCTTTTACTTGGATGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgataccatatatactacttgacatgttaaactttattggttatcatcgtttagGCATCAGATGGGAATCTTGGACCGAAAGAATGCATTCTTTTACTTGGATGGCGCCCTGAGGCTGTAGAAATGATTCAAGAGTATGATAACTATCTTGGTC
                 acttgac  putative branch site (score: 4)
                        atgttaaactttatt  TA-rich tract