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...gagctgcttcatggaagtgaataaaatttcttcacaaacatttatgttctaattttgtttgtttttaattgaattttgccaattttatgttgatggacagAACTAGCCCAGATAAGTGGCATTGCTGCGATTCTTCGGTTTCCTCTCCCTGATCTTGAAGACATTGAGATGTGATGGACAATGTTGGTCAAGCATGTTAA
species | Glycine max |
transcript | GLYMA10G31310.1 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: TTCAGGGGGCTCTGTCCATGTATTTTCGTCCATGCATGTCTCTGGAGAAC AACTAGCCCAGATAAGTGGCATTGCTGCGATTCTTCGGTTTCCTCTCCCTGEST: gi|6913037|gb|AW394501.1|AW394501
genomic: TTCAGGGGGCTCTGTCCATGTATTTTCGTCCATGCATGTCTCTGGAGAACgtgagtttta ... tgatggacagAACTAGCCCAGATAAGTGGCATTGCTGCGATTCTTCGGTTTCCTCTCCCTG
EST: TTCAGGGGGCTCTGTCCATGTATTTTCGTCCATGCATGTCTCTGGAGAAC AACTAGCCCAGATAAGTGGCATTGCTGCGATTCTTCGGTTTCCTCTCCCTGEST: gi|23730712|gb|BU763451.1|BU763451
genomic: TTCAGGGGGCTCTGTCCATGTATTTTCGTCCATGCATGTCTCTGGAGAACgtgagtttta ... tgatggacagAACTAGCCCAGATAAGTGGCATTGCTGCGATTCTTCGGTTTCCTCTCCCTG
EST: TTCAGGGGGCTCTGTCCATGTATTTTCGTCCATGCATGTCTCTGGAGAAC AACTAGCCCAGATAAGTGGCATTGCTGCGATTCTTCGGTTTCCTCTCCCTGEST: gi|19270278|gb|BM886534.1|BM886534
genomic: TTCAGGGGGCTCTGTCCATGTATTTTCGTCCATGCATGTCTCTGGAGAACgtgagtttta ... tgatggacagAACTAGCCCAGATAAGTGGCATTGCTGCGATTCTTCGGTTTCCTCTCCCTG
EST: TTCAGGGGGCTCTGTCCATGTATTTTCCTCCATGCATGTCTCTGGAGAAC AACTAGCCCAGATAAGTGGCATTGCTGCGATTCTTCGGTTTCCTCTCCCTGEST: gi|10252508|gb|BE820274.1|BE820274
genomic: TTCAGGGGGCTCTGTCCATGTATTTTCGTCCATGCATGTCTCTGGAGAACgtgagtttta ... tgatggacagAACTAGCCCAGATAAGTGGCATTGCTGCGATTCTTCGGTTTCCTCTCCCTG
EST: TTCAGGGGGCTCTGTCCATGTATTTTCGTCCATGCATGTCTCTNNNGAAC AACTAGCCCAGATAAGTGGCATNCCTGCGATTCTTCGGTTTCCTCTCCCTGEST: gi|14011604|gb|BG726526.1|BG726526
genomic: TTCAGGGGGCTCTGTCCATGTATTTTCGTCCATGCATGTCTCTGGAGAACgtgagtttta ... tgatggacagAACTAGCCCAGATAAGTGGCATTGCTGCGATTCTTCGGTTTCCTCTCCCTG
EST: TTCAGGGGGCTCTGTCCATGTATTTTCGTCCATGCATGTCTCTGGAGAAC AACTAGCCCAGATAAGTGGCATTGCTGCGATTCTTCGGTTTCCTCTCCCTGEST: gi|19345947|gb|BM890827.1|BM890827
genomic: TTCAGGGGGCTCTGTCCATGTATTTTCGTCCATGCATGTCTCTGGAGAACgtgagtttta ... tgatggacagAACTAGCCCAGATAAGTGGCATTGCTGCGATTCTTCGGTTTCCTCTCCCTG
EST: TCTTTGGGGCTCTGTCCATGTATTTTCGTCCATGCATGTCTCTGGAGAAC AACTAGCCCAGATAAGTGGCATTGCTGCGATTCTTCGGTTTCCTCTCCCTGEST: gi|10231661|gb|BE800549.1|BE800549
genomic: TC-AGGGGGCTCTGTCCATGTATTTTCGTCCATGCATGTCTCTGGAGAACgtgagtttta ... tgatggacagAACTAGCCCAGATAAGTGGCATTGCTGCGATTCTTCGGTTTCCTCTCCCTG
EST: TTCAGGGGGCTCTGTCCATGTATTTTCTTCCATGCATGTCTCTGGAGAAC AACTAGCCCAGATAAGTGGCATTGCTGCGATTCTTCAGTTTCCTCTCCCTGEST: gi|22928753|gb|BU545892.1|BU545892
genomic: TTCAGGGGGCTCTGTCCATGTATTTTCGTCCATGCATGTCTCTGGAGAACgtgagtttta ... tgatggacagAACTAGCCCAGATAAGTGGCATTGCTGCGATTCTTCGGTTTCCTCTCCCTG
EST: TTCAGGGGGCTCTGTCCATGTATTTTCGTCCATGCATGTCTCTGGAGAAC AACTAGCCCAGATAAGTGGCATTGCTGCGATTCTTCGGTTTCCTCTCCCTGEST: gi|21602012|gb|BQ612343.1|BQ612343
genomic: TTCAGGGGGCTCTGTCCATGTATTTTCGTCCATGCATGTCTCTGGAGAACgtgagtttta ... tgatggacagAACTAGCCCAGATAAGTGGCATTGCTGCGATTCTTCGGTTTCCTCTCCCTG
EST: TTCAGGGGGCTCTGTCCATGTATTTTCGTCCATGCATGTCTCTGGAGAAC AACTAGCCCAGATAAGTGGCATTGCTGCGATTCTTCGGTTTCCTCTCCCTGEST: gi|7690977|gb|AW759112.1|AW759112
genomic: TTCAGGGGGCTCTGTCCATGTATTTTCGTCCATGCATGTCTCTGGAGAACgtgagtttta ... tgatggacagAACTAGCCCAGATAAGTGGCATTGCTGCGATTCTTCGGTTTCCTCTCCCTG
EST: TTCAGGGGGCTCTGTCCATGTATTTTCGTCCATGCATGTCTCTGGAGAAC AACTAGCCCAGATAAGTGGCATTGCTGCGATTCTTCGGGTTCCTCTCCCTGEST: gi|31471412|gb|CD413440.1|CD413440
genomic: TTCAGGGGGCTCTGTCCATGTATTTTCGTCCATGCATGTCTCTGGAGAACgtgagtttta ... tgatggacagAACTAGCCCAGATAAGTGGCATTGCTGCGATTCTTCGGTTTCCTCTCCCTG
EST: TTCAGGGGGCTCTGTCCATGTATTTTCGTCCATGCATGTCTCTGGAGAAC AACTAGCCCAGATAAGTGGCATTGCTGCGATTCTTCGGTTTCCTCTCCCTGEST: gi|33389135|gb|CA852342.1|CA852342
genomic: TTCAGGGGGCTCTGTCCATGTATTTTCGTCCATGCATGTCTCTGGAGAACgtgagtttta ... tgatggacagAACTAGCCCAGATAAGTGGCATTGCTGCGATTCTTCGGTTTCCTCTCCCTG
EST: TTCAGGGGGCTCTGTCCATGTATTTTCGTCCATGCATGTCTCTGGAGAAC AACTAGCCCAGATAAGTGGCATTGCTGCGATTCTTCGGTTTCCTCTCCCTG
genomic: TTCAGGGGGCTCTGTCCATGTATTTTCGTCCATGCATGTCTCTGGAGAACgtgagtttta ... tgatggacagAACTAGCCCAGATAAGTGGCATTGCTGCGATTCTTCGGTTTCCTCTCCCTG
gttctaattttgtttgtttttaattgaattttgccaattttatgttgatggacagAACTAGCCCAGATAAGTGGCATTGCTGCGATTCTTCGGTTTCCTCTCCCTGATCTTGAAGACATTGAGATGTGATGGACAATGTTGGTCAAGCATGTTAA
aattttgtttgttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gagctgcttcatggaagtgaataaaatttcttcacaaacatttatgttctaattttgtttgtttttaattgaattttgccaattttatgttgatggacagAACTAGCCCAGATAAGTGGCATTGCTGCGATTCTTCGGTTTCCTCTCCCTGATCTTGAAGACATTGAGATGTGATGGACAATGTTGGTCAAGCATGTTAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- -ctgcttc
- - - - - - - - - -aataaaa
- - - - - - - - - - - - - - - - cacaaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttttgcc