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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattttttttcctctcgtgaatttttacatgtaattattacagcaaattgtatcaggtaatgaataatatgcaaccatgtggaaacggatgcttttaatggcttttcatgctaatatcctgtcattctgaataatatttcttgcagcttatcacaaaaaagtctttatttctgttacagATTGAAGGTAATAATGCAAAAGCAGATGATGCAATCATGCTTGACAAAGACGGTTATGTATCTGAAACCAATGCAACAAACATG

Basic information

species Glycine max
transcript GLYMA10G29770.1
intron # 15
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G29770.1 (Glycine max), 3'ss of exon 15
lower sequence: LOC_Os03g24460.3 (Oryza sativa), 3'ss of exon 14
gtattttttttcctctcgtgaatttttacatgtaattattacagcaaattgtatcaggtaatgaataatatgcaaccatgtggaaacggatgcttttaatggcttttcatgctaatatcctgtcattctgaataatatttcttgcagcttatcacaaaa--aagtctttatttctgtta--cagATTGAAGGTAATAATGCAAAAGCAGATGATGCAATCATGCTTGACAAAGACGGTTATGTATCTGAAACCAATGCAACAAACATG
                                                                    ||    | | | | ||         |||  || ||| | | | |  | ||  |     | | |||        ||     || | | |  |  ||||   || | || |||  ||||| || |||||   |||| | || || ||||| |||||||| || ||||| |||| |||||| ||||| |||||||||||||| 
-------------------------------------------------------------------gtactttatcctttaga---------tttgtatagctgtccttacatacatttt-----tttaaatggagccctttattaattgtaatagcactaagttgctaatgcttttatgcagATAGAGGGTAACCTTGCACAGGCTGAGGATGCCATCATGCTAGATAAAGATGGTTTTGTATCAGAAACAAATGCAACAAACATT

upper sequence: GLYMA10G29770.1 (Glycine max), 3'ss of exon 15
lower sequence: AT5G27410.2 (Arabidopsis thaliana), 3'ss of exon 24
gtattttttttcctctcgtgaatttttacatgtaattattacagcaaattgtatcaggtaatgaataatatgcaaccatgtggaaacggatgcttttaatggcttttcatgctaat-atcctgtcattctgaataatatttcttgcagcttatcacaaaaaagtctt--tatttctgttacagATTGAAGGTAATAATGCAAAAGCAGATGATGCAATCATGCTTGACAAAGACGGTTATGTATCTGAAACCAATGCAACAAACATG
                                                                                          | |  |   | || | ||||     | |  | || ||  ||  | ||       | |  | ||    | |   | ||  |  |  ||  |||||||||| | || ||||| || |  ||||||||||||||||||||||| || || | ||| ||||||||||||||||| ||||| 
-----------------------------------------------------------------------------------------gtaccatcctttgcctgtcatcgagttgaatccgtgatcatgtgttat----tagggacgtcattgtgagatgtttttattggtaatgacacagATTGAAAGCAACAATGCCAACGTCGATGATGCAATCATGCTTGACAAGGATGGGTTTGTGTCTGAAACCAATGCAACCAACATT

upper sequence: GLYMA10G29770.1 (Glycine max), 3'ss of exon 15
lower sequence: AT3G05190.1 (Arabidopsis thaliana), 3'ss of exon 14
gtattttttttcctctcgtgaatttttacatgtaattattacagcaaattgtatcaggtaatgaataatatgcaaccatgtggaaacggatgcttttaatggcttttcatgctaatatcctgtcattctgaataatatttcttgcagcttatcacaaaaaagtctttatttctgttacagATTGAAGGTAATAATGCAAAAGCAGATGATGCAATCATGCTTGACAAAGACGGTTATGTATCTGAAACCAATGCAACAAACATG
                                                                       | |      |  |||     |  || ||    ||  |||     | |  | | | | |||  | || || |  | ||  ||   | |||                 ||||||||| |||| ||  | || || | ||| || || |||||||||||||| |||||||| ||||||||||||||||| ||||| 
-----------------------------------------------------------------------gtactgtattcaaaataagagagttcaagaaattgacat-----tgtgtttttactatgag-attaattttctctgcaaatggaacaaa-----------------cagATTGAAAGTAACAACACGAATGCTGCTGACGCCATTATGCTTGACAAAGATGGTTATGTGTCTGAAACCAATGCAACCAACATT

upper sequence: GLYMA10G29770.1 (Glycine max), 3'ss of exon 15
lower sequence: Vv14s0128g00100.t01 (Vitis vinifera), 3'ss of exon 24
gtattttttttcctctcgtgaatttttacatgtaattattacagcaaattgtatcaggtaatgaataatatgcaaccatgtggaaacggatgcttttaatggcttttcatgctaatatcctgtcattctgaataatatttcttgcagcttatcacaaaaaagtctttatttctgttacagATTGAAGGTAATAATGCAAAAGCAGATGATGCAATCATGCTTGACAAAGACGGTTATGTATCTGAAACCAATGCAACAAACATG
                                                                              | |||     |   | || | || | ||      | |||      ||     | ||    || ||| |  ||| |  |||  |||  ||     || ||||||| ||||| ||||||||||| || ||||||||||||||||||||||| || |||||||| |||||||| ||||| |||||||| 
------------------------------------------------------------------------------tctggtggtagc--ccttcattgtccttatgcattcatacatgtacagatctattatgtcttgttggattttaacttaaattagttatttggggtggtacagATAGAAGGGAATAATGCAAATGCTGATGATGCAATCATGCTTGACAAGGATGGTTATGTTTCTGAAACAAATGCTACAAACATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttctgaataatatttcttgcagcttatcacaaaaaagtctttatttctgttacagATTGAAGGTAATAATGCAAAAGCAGATGATGCAATCATGCTTGACAAAGACGGTTATGTATCTGAAACCAATGCAACAAACATG
                                     tctttatttctgtt  CT-rich tract
                              aaaaaagtctttattt  TA-rich tract