1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' | 24 5' 3' | 25 5' 3' |
gtaagttggatatggatgagggtaattattcctttacagtatcatgcttggtgcttggtggacgtttaagatgtattatattaaagtttcttatgacattttccaaaatattttctccagGTTATTTTCTTGTGGGACAAGTAAAGATGGAGAGTCTTTTCTTGTTGAATGGAATGAAAGTGAAGGAGCCATTAAGAGAACATACAATGGATTCAGAAAA
species | Glycine max |
transcript | GLYMA10G29090.1 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: GCCCCTGGTCACTGGTGCACTACAATGCTTTACAGTGCTGATGGAACTAG GTTATTTTCTTGTGGGACAAGTAAAGATGGAGAGTCTTTTCTTGGTGAATGEST: gi|9986267|gb|BE660375.1|BE660375
genomic: GCCCCTGGTCACTGGTGCACTACAATGCTTTACAGTGCTGATGGAACTAGgtaagttgga ... ttttctccagGTTATTTTCTTGTGGGACAAGTAAAGATGGAGAGTCTTTTCTTGTTGAATG
EST: GCCCCTGGTCACTGGTGCACTACAATGCTTTACAGTGCTGATGGAACTAG GTTATTTTCTTGEST: gi|193429146|gb|FK397650.1|FK397650
genomic: GCCCCTGGTCACTGGTGCACTACAATGCTTTACAGTGCTGATGGAACTAGgtaagttgga ... ttttctccagGTTATTTTCTTG
EST: GCCCCTGGTCACTGGTGCACTACAATGCTTTACAGTGCTGATGGAACTAG GTTATTT-CT-GTGGGAEST: gi|254335507|gb|GR847035.1|GR847035
genomic: GCCCCTGGTCACTGGTGCACTACAATGCTTTACAGTGCTGATGGAACTAGgtaagttgga ... ttttctccagGTTATTTTCTTGTGGGA
EST: GCCCCTGGTCACTGGTGCACTACAATGCTTTACAGTGCTGATGGAACTAG GTTATTTTCTTGTGGGACAAGTAAAGATGGAGAGTCTTTTCTTGTTGAATG
genomic: GCCCCTGGTCACTGGTGCACTACAATGCTTTACAGTGCTGATGGAACTAGgtaagttgga ... ttttctccagGTTATTTTCTTGTGGGACAAGTAAAGATGGAGAGTCTTTTCTTGTTGAATG
ttaagatgtattatattaaagtttcttatgacattttccaaaatattttctccagGTTATTTTCTTGTGGGACAAGTAAAGATGGAGAGTCTTTTCTTGTTGAATGGAATGAAAGTGAAGGAGCCATTAAGAGAACATACAATGGATTCAGAAAA
tattttctcc CT-rich tract
tattatattaaagttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttggatatggatgagggtaattattcctttacagtatcatgcttggtgcttggtggacgtttaagatgtattatattaaagtttcttatgacattttccaaaatattttctccagGTTATTTTCTTGTGGGACAAGTAAAGATGGAGAGTCTTTTCTTGTTGAATGGAATGAAAGTGAAGGAGCCATTAAGAGAACATACAATGGATTCAGAAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA