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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttgcatttcttgtcatgttacttcttattatagaatattgttatgcaattgcatacttttttactgatatactgaccatttctgatatttttttgtttttttccattgtggatccaccagGAAAGTTCAAT

Basic information

species Glycine max
transcript GLYMA10G21350.1
intron # 15
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193410500|gb|FK379833.1|FK379833
EST:     TTGTCAGAGATCCACATTTGTTCACTTTATCATTTAACAAAG                         GAAAGTTCAAT
genomic: TTGTCAGAGATCCACATTTGTTCACTTTATCATTTAACAAAGgttgcatttc ... gatccaccagGAAAGTTCAAT
EST: gi|207759116|gb|GD733559.1|GD733559
EST:     TAATGAGGTTGTCAGAGATCCACATTTGTTCACTTTATCATTTAACAAAG                         GAAAGTTCAAT
genomic: TAATGAGGTTGTCAGAGATCCACATTTGTTCACTTTATCATTTAACAAAGgttgcatttc ... gatccaccagGAAAGTTCAAT
EST: gi|9565739|gb|BE475248.1|BE475248
EST:     TAATGAGGTTGTCAGAGATCCACATTTGTTCACTTTATCATTTAACAAAG                         GAAAGTTCAAT
genomic: TAATGAGGTTGTCAGAGATCCACATTTGTTCACTTTATCATTTAACAAAGgttgcatttc ... gatccaccagGAAAGTTCAAT
EST: gi|207697250|gb|GD679471.1|GD679471
EST:     TAATGAGGTTGTCAGAGATCCACATTTGTTCACTTTATCATTTAACAAAG                         GAAAGTCCAAT
genomic: TAATGAGGTTGTCAGAGATCCACATTTGTTCACTTTATCATTTAACAAAGgttgcatttc ... gatccaccagGAAAGTTCAAT
EST: gi|208143944|gb|GD941561.1|GD941561
EST:     TGATGAGGTTGTCAGAGATCCACATTTGTTCACTTTATCATTTAAC-AAG                         GAAAGTTCAAT
genomic: TAATGAGGTTGTCAGAGATCCACATTTGTTCACTTTATCATTTAACAAAGgttgcatttc ... gatccaccagGAAAGTTCAAT
EST: gi|207697068|gb|GD679947.1|GD679947
EST:     TAATGAGGTTGTCAGAGATCCACATTTGTTCACTTTATCATTTAACAAAG                         GAAAGTTCAAT
genomic: TAATGAGGTTGTCAGAGATCCACATTTGTTCACTTTATCATTTAACAAAGgttgcatttc ... gatccaccagGAAAGTTCAAT
EST: gi|13481166|gb|BG510509.1|BG510509
EST:     TAATGAGGTTGTCAGAGATCCACATTTGTTCACTTTATCATTTAACAAAG                         GAAAGTTCAAT
genomic: TAATGAGGTTGTCAGAGATCCACATTTGTTCACTTTATCATTTAACAAAGgttgcatttc ... gatccaccagGAAAGTTCAAT
EST: gi|193616108|gb|FK571926.1|FK571926
EST:     TAATGAGGTTGTCAGAGATCCACATTTGTTCACTTTATCATTTAACAAAG                         GAAAGTTCAAT
genomic: TAATGAGGTTGTCAGAGATCCACATTTGTTCACTTTATCATTTAACAAAGgttgcatttc ... gatccaccagGAAAGTTCAAT
EST: gi|26048794|gb|CA785247.1|CA785247
EST:     TAATGAGGTTGTCAGAGATCCACATTTGTTCACTTTATCATTTAACAAAG                         GAAAGTTCAAT
genomic: TAATGAGGTTGTCAGAGATCCACATTTGTTCACTTTATCATTTAACAAAGgttgcatttc ... gatccaccagGAAAGTTCAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gatatactgaccatttctgatatttttttgtttttttccattgtggatccaccagGAAAGTTCAAT
            atttctgatatttttt  TA-rich tract