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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagttgttgatattcaagaaaatgttccttccctggtggtgttcattcaaattttactgcattgatcaagctagtgctcaattataaatatattttcatttcagTGATCACTTAGCCCTTCTCAAAGCTTTTGAAGGATGGAAGGAGGCAAAGCGAAGTGGGAACGAAAAACAATTTGGTTGGGATAATTTCCTATCCCTTGCA

Basic information

species Glycine max
transcript GLYMA10G10180.1
intron # 15
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA10G10180.1 (Glycine max), 3'ss of exon 15
lower sequence: Vv08s0032g01230.t01 (Vitis vinifera), 3'ss of exon 13
-gttagttgttgatattcaagaaaatgttccttccctgg-------tggtgttcattcaaattttactgcattgatcaagctagtgctcaattataaatatattttcatttcagTGATCACTTAGCCCTTCTCAAAGCTTTTGAAGGATGGAAGGAGGCAAAGCGAAGTGGGAACGAAAAACAATTTGGTTGGGATAATTTCCTATCCCTTGCA
  | |||| || |        |   |||||  | | | |       | |  |   |||||| |||||     |  |   | ||  |   |||| |  | |   ||| | | |||||||||| |||| |||||||| || |||||||||||||| || |||||  | |||||||| ||||   | ||  ||||||| |||||| |||| |    |
gttcagttatttaacaaagtcatgctgttctctgctttgagaattgtagaatcttttcaaaatttacattgattttgttgataaggtgaaattttccacac-cttttaatgcagTGATCACATAGCACTTCTCAATGCATTTGAAGGATGGAAAGATGCAAAATGCAGTGGGAAGGAAAGGGACTTCTGTTGGGAAAATTTCTTATCACCAATA

upper sequence: GLYMA10G10180.1 (Glycine max), 3'ss of exon 15
lower sequence: PP1S36_206V6.1 (Physcomitrella patens), 3'ss of exon 14
gttagttgttgatattcaagaaaatgttccttccctggtggtgttcattcaaattt-tactgcattgatcaagctagtgctcaattataaatatattttcatttcagTGATCACTTAGCCCTTCTCAAAGCTTTTGAAGGATGGAAGGAGGCAAAGCGAAGTGGGAACGAAAAACAATTTGGTTGGGATAATTTCCTATCCCTTGCA
     ||||   | |||   |  |   |       ||| | ||     | | ||    | ||   |  | ||  |    |  ||  || | ||| ||    |  |||||| ||  |||| || || |||||||||||||||||| |||||||||||||    || |  ||     | ||| ||||||| || ||| | |||      
----attgt--gtgttcggaatgaccctgaaaatatggagatgaaggataagatgaacagtgaccttttgaaattctgacaaaaccatcactatgttgct-tcgcagTGACCATGTAGCACTGCTGAAAGCTTTTGAAGGATGGCAGGAGGCAAAGCGTGCAGGAAGAGAGCGTAATTTTTGTTGGGAGAACTTCTTGTCCTCAAAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15203535|gb|BI426303.1|BI426303
EST:     AAAGAGGAAGCCGATGCAGCAAAACAATCTTTTGCAGGTGATTCTTGCAG                         TGATCACTTAGCCCTTCTCAAAGCTTTTGAAGGATGGAAGGAGGCAAAGCG
genomic: AAAGAGGAAGCCGATGCAGCAAAACAATCTTTTGCAGGTGATTCTTGCAGgttagttgtt ... ttcatttcagTGATCACTTAGCCCTTCTCAAAGCTTTTGAAGGATGGAAGGAGGCAAAGCG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aattttactgcattgatcaagctagtgctcaattataaatatattttcatttcagTGATCACTTAGCCCTTCTCAAAGCTTTTGAAGGATGGAAGGAGGCAAAGCGAAGTGGGAACGAAAAACAATTTGGTTGGGATAATTTCCTATCCCTTGCA
          cattgat  putative branch site (score: 4)
                                           ttttcatttc  putative PPT
                            tcaattataaatatat  TA-rich tract