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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttagatgggcacagttcttctctcttgtgtaacttacactgcataatatagatagccaacatctttattgtctttacagGAGGCACAGATTGATCAGTTGAATGTGCAAAAGCAGGAAATATTAGAAAAATGTGAACTAGAACAGATTAGCCTCCCGATCATACTGGATCCTATGGATA

Basic information

species Glycine max
transcript GLYMA10G04300.1
intron # 15
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192323291|gb|FK017052.1|FK017052
EST:     CTGCAGCCACAACAAACATATCCAAACTTAATCGTCTGATACACTCTAAG                         GAGGCACAGATTGATCAGTTGAATGTGCAAAAGCAGGAAATATTAGAAAAA
genomic: CTGCAGCCACAACAAACATATCCAAACTTAATCGTCTGATACACTCTAAGgttagatggg ... gtctttacagGAGGCACAGATTGATCAGTTGAATGTGCAAAAGCAGGAAATATTAGAAAAA
EST: gi|208053172|gb|GD853505.1|GD853505
EST:     CTGCAGCCACAACAAACATATCCAAACTTAATCGTCTGATACACTCTAAG                         GAGGCACAGATTGGTCAGTTGAATGTGC
genomic: CTGCAGCCACAACAAACATATCCAAACTTAATCGTCTGATACACTCTAAGgttagatggg ... gtctttacagGAGGCACAGATTGATCAGTTGAATGTGC
EST: gi|208144438|gb|GD942189.1|GD942189
EST:     CTGCAGCCACAACAAACATATCCAAACTTAATCGTCTGATACACTCTAAG                         GAGGCACAGATTGATCAGTTGAATGTG
genomic: CTGCAGCCACAACAAACATATCCAAACTTAATCGTCTGATACACTCTAAGgttagatggg ... gtctttacagGAGGCACAGATTGATCAGTTGAATGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgtgtaacttacactgcataatatagatagccaacatctttattgtctttacagGAGGCACAGATTGATCAGTTGAATGTGCAAAAGCAGGAAATATTAGAAAAATGTGAACTAGAACAGATTAGCCTCCCGATCATACTGGATCCTATGGATA
      aacttac  putative branch site (score: 2)
                                     tctttattgtcttt  putative PPT
                  ataatatagata  TA-rich tract