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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatcagaaccatatgcatgtatctataactcttcttcattgttacacttttcctccaacattcttttacgtaattttgaatttttatcattcagGCATTATGGCTTTATGCGCCACCAGTTCCTACTATGACATCACTGAAGTTGCAACCCGGATTCTTCCTAATGTTGTTGTGCTCACAATTGATCCTGACAG

Basic information

species Glycine max
transcript GLYMA09G38740.1
intron # 15
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G38740.1 (Glycine max), 3'ss of exon 15
lower sequence: Vv13s0067g03110.t01 (Vitis vinifera), 3'ss of exon 15
------gtatcagaaccatatgcatgtatctataactcttcttcattgttacacttttcctccaacattcttttacgtaattttgaatttttatcattcagGCATTATGGCTTTATGCGCCACCAGTTCCTACTATGACATCACTGAAGTTGCAACCCGGATTCTTCCTAATGTTGTTGTGCTCACAATTGATCCTGACAG
      | |  ||||| | |   |    | | ||  |     |     |      ||       |     ||| ||  |||||  |||| || |    ||||  ||||||||||||| || |||||||| || ||||||||||| ||  ||||||| |||||||| || ||||||||||| || || ||||||||||||||
cagaaggaaaaagaacaagaaaaaaaattatttaggttgcaatttaattcgtcagttaatgtggatgggttttgaca-aatttaaaattgttttgtggcagGAGTTATGGCTTTATGTGCGACCAGTTCTTATTATGACATCACAGAGATTGCAACTCGGATTCTGCCAAATGTTGTTGTACTTACCATTGATCCTGACAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|12490066|gb|BG043587.1|BG043587
EST:     ATTTACAGTCCGTGCATTACGTGATACTTTTCCACCTGCTAGAGGAGCAG                         GCATTATGGCTTTATGCGCCACCAGTTCCTACTATGACATCACTGAAGTTG
genomic: ATTTACAGTCCGTGCATTACGTGATACTTTTCCACCTGCTAGAGGAGCAGgtatcagaac ... tatcattcagGCATTATGGCTTTATGCGCCACCAGTTCCTACTATGACATCACTGAAGTTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttacacttttcctccaacattcttttacgtaattttgaatttttatcattcagGCATTATGGCTTTATGCGCCACCAGTTCCTACTATGACATCACTGAAGTTGCAACCCGGATTCTTCCTAATGTTGTTGTGCTCACAATTGATCCTGACAG
                                         tttttatc  CT-rich tract
                    attcttttacgtaatt  TA-rich tract