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gtaagcataaatattatttaaagctgtcattttttttattataatgattgattcataaatactgcatatgggtaacatttatttatatggtccttgcatcttatagGTCATCCTATAAAAGCTGGTTTGCTTTTTTGATTAAATATGAGTATATGACACAGCTGGACCATCTCTCCTACTGTTTTCCAT
species | Glycine max |
transcript | GLYMA09G35050.1 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: TGTGCATTAGTCGCGGGATCAGTGGGCTTCTACTAACGTTGGTTCTTCTG GTCATCCTATAAAAGCTGGTTTGCTTTTTTGATTAAATATGAGTATATGACEST: gi|193484494|gb|FK450262.1|FK450262
genomic: TGTGCATTAGTCGCGGGATCAGTGGGCTTCTACTAACGTTGGTTCTTCTGgtaagcataa ... catcttatagGTCATCCTATAAAAGCTGGTTTGCTTTTTTGATTAAATATGAGTATATGAC
EST: CGGGATCAGTTGGGTCTTCTACTAACGTTGGTTCTTCTG GTCATCCTATAAAAGCTGGTTTGCTTTTTTGATTAAATATGAGTATATGACEST: gi|214005044|gb|DB985418.1|DB985418
genomic: CGGGATCAG-TGGG-CTTCTACTAACGTTGGTTCTTCTGgtaagcataa ... catcttatagGTCATCCTATAAAAGCTGGTTTGCTTTTTTGATTAAATATGAGTATATGAC
EST: AGTCGCGGGATCAGTGGGCTTCTACTAACGTTGG-TGTGTCTG GTCATCCTATAAAAGCTGGTTTGCTTTTTTGATTAAATATGAGTATATGA
genomic: AGTCGCGGGATCAGTGGGCTTCTACTAACGTTGGTTCT-TCTGgtaagcataa ... catcttatagGTCATCCTATAAAAGCTGGTTTGCTTTTTTGATTAAATATGAGTATATGA
ttcataaatactgcatatgggtaacatttatttatatggtccttgcatcttatagGTCATCCTATAAAAGCTGGTTTGCTTTTTTGATTAAATATGAGTATATGACACAGCTGGACCATCTCTCCTACTGTTTTCCAT
gggtaac putative branch site (score: 3)
tccttgc putative PPT
taacatttatttatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcataaatattatttaaagctgtcattttttttattataatgattgattcataaatactgcatatgggtaacatttatttatatggtccttgcatcttatagGTCATCCTATAAAAGCTGGTTTGCTTTTTTGATTAAATATGAGTATATGACACAGCTGGACCATCTCTCCTACTGTTTTCCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA