1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
gttgccaacaattagagttgctttgtacaattatatattctgcgtattttgataatgggatatatttaaagatccctctgtttatgttcattgcttcatgttcttcagATCAAGGAGCTTGAGAGAAAACTGAAAGAGCAGGAACAAAGCTCAATGTCCTTGCTTCGTCAACAG
species | Glycine max |
transcript | GLYMA09G33340.1 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: AAGATCAGATGCAAGGGTCTGAATCTGAATCTGCCATTTTGAAAGATAAG ATCAAGGAGCTTGAGAGAAAACTGAAAGAGCAGGAACAAAGCTCAATGTCCEST: gi|207793724|gb|GD766764.1|GD766764
genomic: AAGATCAGATGCAAGGGTCTGAATCTGAATCTGCCATTTTGAAAGATAAGgttgccaaca ... tgttcttcagATCAAGGAGCTTGAGAGAAAACTGAAAGAGCAGGAACAAAGCTCAATGTCC
EST: AAGATCAGATGCAAGGGTCTGAATCTGAATCTGCCATTTTGAAAGATAAG ATCAAGGAGCTTGEST: gi|51336259|gb|CO980125.1|CO980125
genomic: AAGATCAGATGCAAGGGTCTGAATCTGAATCTGCCATTTTGAAAGATAAGgttgccaaca ... tgttcttcagATCAAGGAGCTTG
EST: AATCTGCCATTTTGAAAGATAAG ATCAAGGAGCTTGAGAGAAAACTGAAAGAGCAGGAACAAAGCTCAATGTCNEST: gi|208068153|gb|GD861887.1|GD861887
genomic: AATCTGCCATTTTGAAAGATAAGgttgccaaca ... tgttcttcagATCAAGGAGCTTGAGAGAAAACTGAAAGAGCAGGAACAAAGCTCAATGTCC
EST: GATCAGATGCAAGGGTCTGAATCTGAATCTGCCATTTTGAAAGAATAAAG ATCAAGGAGCTTGEST: gi|192309002|gb|FK001778.1|FK001778
genomic: GATCAGATGCAAGGGTCTGAATCTGAATCTGCCATTTTGAAAGA-TAA-Ggttgccaaca ... tgttcttcagATCAAGGAGCTTG
EST: AAGATCAGATGCAAGGGTCTGAATCTGAATCTGCCATTTTGAAAGATAAG ATCAAGGAGCTTGAGAGAAAACTGAAAGAGCAGGAACAAAGCTCAATGTCC
genomic: AAGATCAGATGCAAGGGTCTGAATCTGAATCTGCCATTTTGAAAGATAAGgttgccaaca ... tgttcttcagATCAAGGAGCTTGAGAGAAAACTGAAAGAGCAGGAACAAAGCTCAATGTCC
aatgggatatatttaaagatccctctgtttatgttcattgcttcatgttcttcagATCAAGGAGCTTGAGAGAAAACTGAAAGAGCAGGAACAAAGCTCAATGTCCTTGCTTCGTCAACAG
tgttcttc CT-rich tract
atatatttaaagat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttgccaacaattagagttgctttgtacaattatatattctgcgtattttgataatgggatatatttaaagatccctctgtttatgttcattgcttcatgttcttcagATCAAGGAGCTTGAGAGAAAACTGAAAGAGCAGGAACAAAGCTCAATGTCCTTGCTTCGTCAACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA