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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattgatcacccctttttggttttggatgttctgtttgacattctttacaattaattactaagaggcaaatgttgtgatggttgcagAACAGATATCCTCATTCTCTTCGTGAATCTGGATCCTAATCTTCTGCAGTCTTATGTTGTTCGACAGGAGGGAATTACACTTCTTGGACTATTG

Basic information

species Glycine max
transcript GLYMA09G04260.1
intron # 15
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA09G04260.1 (Glycine max), 3'ss of exon 15
lower sequence: Vv05s0077g01200.t01 (Vitis vinifera), 3'ss of exon 15
-----------gtattgatcacccctttttggt------tttggatgttct--gtttgacattctttacaattaatt-------actaagaggcaaatgttgtgatggttgcagAACAGATATCCTCATTCTCTTCGTGAATCTGGATCCTAATCTTCTGCAGTCTTATGTTGTTCGACAGGAGGGAATTACACTTCTTGGACTATTG
                ||  | |  | ||| |       ||  | | ||||   | ||   ||| |||| ||| |||       |  |||| |  ||| |  | |||| ||||| ||||| ||||||||||| ||| |||||| |||||| || |||||||  ||||||||  |||| ||||| |||||| |||||||||||||  ||
gtaatgaatgaacccagaatatctgtctttagcataaaattcagcttttcttaatctgcatttccttaccattgatttggtcctaacaagaagtcaat-tgtttatggatgcagGACAGACATCCTCATTCTTTTCCTGAATCAGGATCCAAACCTTCTGCGTTCTTATGTCATTCGGCAGGAAGGAATTCCACTTCTTGGACTTCTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193335100|gb|FK301032.1|FK301032
EST:     TCTTGCAAAGTCAAGACAAGAAGCTTGTTCTTACTGG                         AACAGATATCCTCATTCTCTTCGTGAATCTGGA
genomic: TCTTGCAAAGTCAAGACAAGAAGCTTGTTCTTACTGGgtattgatca ... atggttgcagAACAGATATCCTCATTCTCTTCGTGAATCTGGA
EST: gi|19270432|gb|BM886688.1|BM886688
EST:     ATCGTCACTGATGTCTTGCAAAGTCAAGACAAGAAGCTTGTTCTTACTGG                         AACAGATATCCTCATTCTCTTCGTGAATCTGGATCCTAATCTTCTGCAGTC
genomic: ATCGTCACTGATGTCTTGCAAAGTCAAGACAAGAAGCTTGTTCTTACTGGgtattgatca ... atggttgcagAACAGATATCCTCATTCTCTTCGTGAATCTGGATCCTAATCTTCTGCAGTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtttgacattctttacaattaattactaagaggcaaatgttgtgatggttgcagAACAGATATCCTCATTCTCTTCGTGAATCTGGATCCTAATCTTCTGCAGTCTTATGTTGTTCGACAGGAGGGAATTACACTTCTTGGACTATTG
                 aattaat  putative branch site (score: 3)
        attctttacaattaat  TA-rich tract