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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtcaatgatgaccattcaaggtacctattatttctttggtttatttgttcgatttgatgttcagtctattccttaattgattgcagGAGGTGAGAAGGGGTGCTATGAAAGATCACCAATCAATCATGTTGACAAATTTTCTTGTCCCATTATTTTATTTCAAGGATTGGATGACAAG

Basic information

species Glycine max
transcript GLYMA08G42730.1
intron # 15
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G42730.1 (Glycine max), 3'ss of exon 15
lower sequence: LOC_Os06g11180.1 (Oryza sativa), 3'ss of exon 15
gtaagtcaatga-----tgaccatt-----caaggtacctattatttctttggtttatttgttcgatttgatgttcagtctattccttaattgat-tgcagGAGGTGAGAAGGGGTGCTATGAAAGATCACCAATCAATCATGTTGACAAATTTTCTTGTCCCATTATTTTATTTCAAGGATTGGATGACAAG
||||| | || |     | || |||        ||||    |  |   |        | ||| | || | ||  |||  || || ||  |||| | | |||||  ||| || |  | |||||| |||||||| |||||   ||||||||||||| | |||||  ||||||| |||||||| |||||||| |||
gtaagaccataagagtctcactatttctgctttggtaaaagtattcaatccaacccgtatgtccaatgtaatagtca-ccttttgctacattgctcttcagGAAATGAAAATGCTTACTATGAGAGATCACCGATCAACTTTGTTGACAAATTTACATGTCCAGTTATTTTGTTTCAAGGCTTGGATGATAAG

upper sequence: GLYMA08G42730.1 (Glycine max), 3'ss of exon 15
lower sequence: Vv18s0001g11140.t01 (Vitis vinifera), 3'ss of exon 15
gtaagtcaatgatgaccattcaaggtacctattatttctttggtttatt-tgttcgatttgatgttcagtctattccttaattgattgcagGAGGTGAGAAGGGGTGCTATGAAAGATCACCAATCAATCATGTTGACAAATTTTCTTGTCCCATTATTTTATTTCAAGGATTGGATGACAAG
|||| | |  ||    |||      |  |  || | | |||| ||| || |  | | |||  |  | || |||| | || | ||| |||||||||||| |  |  | || ||| || ||||| |||||    ||||| ||||||||||||||||| |||||||| || |||||||| ||||||
gtaaataatagaattgcatatgttttgtcagttctgtatttgattttttatactggttttagttctgaggctatac-ttgactgactgcagGAGGTGAAAGTGATTACTTTGAGAGGTCACCTATCAACTTCGTTGATAAATTTTCTTGTCCCATAATTTTATTCCAGGGATTGGAAGACAAG

upper sequence: GLYMA08G42730.1 (Glycine max), 3'ss of exon 15
lower sequence: Vv18s0001g11150.t01 (Vitis vinifera), 3'ss of exon 15
---------------gtaagtcaatgatgaccattcaaggtacctattatt-tct----ttggtttatttgttcgat-ttgatgttcagtctattccttaattgattgcagGAGGTGAGAAGGGGTGCTATGAAAGATCACCAATCAATCATGTTGACAAATTTTCTTGTCCCATTATTTTATTTCAAGGATTGGATGACAAG
               | || |   | |||   | | |      || | ||  |||    || | ||||   ||| || ||||   |   |  | |  | || || || ||||| |||| |  |  | || ||| || ||||| ||||||  |||||| ||||||||||| |||||||||||||| ||||||||||| ||||||
gtaaataacctttcaggaaattt-ttatgttgaattacatattctgtgatagtctaaaattcgattatactttccatattgagtattcatgcaattgtcaactggtttcagGAAGTGAAAGTGCTTACTTTGAGAGGTCACCGATCAATTTTGTTGATAAATTTTCTTGCCCCATTATTTTATTCCAAGGATTGGAAGACAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttctttggtttatttgttcgatttgatgttcagtctattccttaattgattgcagGAGGTGAGAAGGGGTGCTATGAAAGATCACCAATCAATCATGTTGACAAATTTTCTTGTCCCATTATTTTATTTCAAGGATTGGATGACAAG
                                           aattgat  putative branch site (score: 4)
        tttatttgtt  TA-rich tract