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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttttatttccttctgtcctctttggttgcagAGAAGAGGTAGGGCTGGTCGTGTGCAGCCAGGAGAATGTTACCACCTTTACCCCAAATGTGTTTATGATGCCTTTTCTGAATATCAACTTCCTGAACTAC

Basic information

species Glycine max
transcript GLYMA08G24630.1
intron # 15
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA08G24630.1 (Glycine max), 3'ss of exon 15
lower sequence: LOC_Os03g53760.1 (Oryza sativa), 3'ss of exon 11
---------------------------------------------------------------------gttttatt-tccttctgtcctctttggttgcagAGAAGAGGTAGGGCTGGTCGTGTGCAGCCAGGAGAATGTTACCACCTTTACCCCAAATGTGTTTATGATGCCTTTTCTGAATATCAACTTCCTGAACTAC
|| | || || | | |||| | ||||||| || || || |||||||||||||| || |||||||| || ||||| ||||| | |||||| |||||||| ||| | || || || |||||||| || |
tgaagataactccttaattcagatacactatactattgttttcctctaccatatccttctttgccatatgtctgatagtctccccattatcttcg--tgcagAGGAGGGGCAGAGCTGGTCGTGTGCAACCTGGAGAATGCTATCACCTCTACCCTAGATGTGTGTATGATGCATTTGCAGATTACCAGCTTCCTGAGCTCC

upper sequence: GLYMA08G24630.1 (Glycine max), 3'ss of exon 15
lower sequence: AT5G04895.1 (Arabidopsis thaliana), 3'ss of exon 11
-------------------------------------------------------------------gttttatttccttctgtcctctttggt-tgcagAGAAGAGGTAGGGCTGGTCGTGTGCAGCCAGGAGAATGTTACCACCTTTACCCCAAATGTGTTTATGATGCCTTTTCTGAATATCAACTTCCTGAACTAC
| | ||| || ||||| | |||||||| || || ||||| ||| || || |||||||| || ||||| ||||||||||| || |||||||| ||| | || ||||||||||||||||| |
caatttcagaacatccattttgctatctggtacatcttttgatagctataaagctttctcatttggtatgtccaacatttcccctctatttggccttcagAGAAGGGGAAGAGCTGGGCGTCTGTTTCCGGGAGAATGCTATCACCTGTACCCCAAATGCGTCTATGATGCTTTTGCAGAGTATCAACTTCCTGAACTTC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttttatttccttctgtcctctttggttgcagAGAAGAGGTAGGGCTGGTCGTGTGCAGCCAGGAGAATGTTACCACCTTTACCCCAAATGTGTTTATGATGCCTTTTCTGAATATCAACTTCCTGAACTAC
                                              ttttatttccttctgt  CT-rich tract
 ttttattt  TA-rich tract