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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tagattcttgtgagtgtagtttccttgcaatggatttgtttgaatgattattcatctaaatatgcagtcctagttaatatttgtatgcttgctatgtcagGGCTCTGGTACATGGAGCAGTCATCTCTGCCTTTCTAACCATTGCTCAAGCCATGACTGATCAAGGCTCTATATAGGGGTTCATATCGCAAAGTTTTGAA

Basic information

species Glycine max
transcript GLYMA08G20930.2
intron # 15
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58024043|gb|CX710784.1|CX710784
EST:     AGAGCTATGAAAGCTGCAACTGATTTTGGTTATCAAAAAGAAAGCCCTGA                         GGCTTTGGTACATGGAGCAGTCATCTCTGCCTTTCTAACCATTGCTCAAGC
genomic: AGAGCTATGAAAGCTGCAACTGATTTTGGTTATCAAAAAGAAAGCCCTGAgtaagtgctt ... gctatgtcagGGCTCTGGTACATGGAGCAGTCATCTCTGCCTTTCTAACCATTGCTCAAGC
EST: gi|26059109|gb|CA802023.1|CA802023
EST:     AGAGCTATGAAAGCTGCAACTGATTTTGGTTATCAAAAAGAAAGCCCTGA                         GGCTCTGGTACATGGAGCAGTCATCTCTGCCTTTCTAACCATTGCTCAAGC
genomic: AGAGCTATGAAAGCTGCAACTGATTTTGGTTATCAAAAAGAAAGCCCTGAgtaagtgctt ... gctatgtcagGGCTCTGGTACATGGAGCAGTCATCTCTGCCTTTCTAACCATTGCTCAAGC
EST: gi|193488465|gb|FK457604.1|FK457604
EST:     AGAGCTATGAAAGCTGCAACTGATTTTGGTTATCAAAAAGAAAGCCCTGA                         GGCTCTGGTACATGGAGCAGTCATCTCTGCCTTTCTAACCATTGCTCAAGC
genomic: AGAGCTATGAAAGCTGCAACTGATTTTGGTTATCAAAAAGAAAGCCCTGAgtaagtgctt ... gctatgtcagGGCTCTGGTACATGGAGCAGTCATCTCTGCCTTTCTAACCATTGCTCAAGC
EST: gi|193546379|gb|FK500022.1|FK500022
EST:     AGAGCTATGAAAGCTGCAACTGATTTTGGTTATCAAAAAGAAAGCCCTGA                         GGCTCTGGTACATGGAGCAGTCATCTCTGCCTTTCTAACCATTGCTCAAGC
genomic: AGAGCTATGAAAGCTGCAACTGATTTTGGTTATCAAAAAGAAAGCCCTGAgtaagtgctt ... gctatgtcagGGCTCTGGTACATGGAGCAGTCATCTCTGCCTTTCTAACCATTGCTCAAGC
EST: gi|193628216|gb|FK572756.1|FK572756
EST:     CTGCAACTGATTTTGGTTATCAAAAAGAAAGCCCTGA                         GGCTCTGGTACATGGAGCAGTCATCCCTGCCTTTCTAACCATTGCTCAAGC
genomic: CTGCAACTGATTTTGGTTATCAAAAAGAAAGCCCTGAgtaagtgctt ... gctatgtcagGGCTCTGGTACATGGAGCAGTCATCTCTGCCTTTCTAACCATTGCTCAAGC
EST: gi|10254178|gb|BE821944.1|BE821944
EST:     AGAGCTATGAAAGCTGCAACTGATTTTGGTTATCAAAAAGAAAGCCCTGA                         GGCTCTGGTACATGGAGCAGTCATCTCTGCCTTTCTAACCATTGCTCAAGC
genomic: AGAGCTATGAAAGCTGCAACTGATTTTGGTTATCAAAAAGAAAGCCCTGAgtaagtgctt ... gctatgtcagGGCTCTGGTACATGGAGCAGTCATCTCTGCCTTTCTAACCATTGCTCAAGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gattattcatctaaatatgcagtcctagttaatatttgtatgcttgctatgtcagGGCTCTGGTACATGGAGCAGTCATCTCTGCCTTTCTAACCATTGCTCAAGCCATGACTGATCAAGGCTCTATATAGGGGTTCATATCGCAAAGTTTTGAA
                         tagttaatatttgtat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tagattcttgtgagtgtagtttccttgcaatggatttgtttgaatgattattcatctaaatatgcagtcctagttaatatttgtatgcttgctatgtcagGGCTCTGGTACATGGAGCAGTCATCTCTGCCTTTCTAACCATTGCTCAAGCCATGACTGATCAAGGCTCTATATAGGGGTTCATATCGCAAAGTTTTGAA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAAAG