Sequence
atgc intronic sequence ATGC exonic sequence...ttttcctttatttttctgtttgcaaatatagcaagatggataagtaggtctagtaacaaatggtaatagttctgactattcaaatcctttttatctgaagGGAGCAAAAGTAATTCTTGGGGGTAAAAGACATAGCCTTGGACTTACTTTTTATGAACCCACAGTCATCAGTGATGTCAACAGTGATATGCACATATCAA
Basic information
species | Glycine max |
transcript | GLYMA08G17450.1 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA08G17450.1 (Glycine max), 3'ss of exon 15
lower sequence: Vv19s0085g00880.t01 (Vitis vinifera), 3'ss of exon 15
ttttcctttatttttctgtttgcaaatatagcaagat--ggataagta-ggtctagtaacaaatggtaatagttctgactattcaaatcctttttatctgaagGGAGCAAAAGTAATTCTTGGGGGTAAAAGACATAGCCTTGGACTTACTTTTTATGAACCCACAGTCATCAGTGATGTCAACAGTGATATGCACATATCAA
| | | | | || | | | ||| || |||||| | | | | | | || || | | | || | | || |||| |||||||||||||||| ||||||||||||||||||| || || ||| | || || ||||| || || || || |||| |||| | ||| |||| || | |
-ctccactgaaataattgatgaattgtctttcaacattaggataattttgatgcaattccctat--tatttgcttctcatagctatacaattgttatgtgaagGGAGCAAAAGTCCTTCTTGGGGGTAAAAGACACAGTCTGGGAATGACCTTCTATGAGCCAACGGTAATTGGTGACATCAAGAATGACATGCTTATTGCGA
upper sequence: GLYMA08G17450.1 (Glycine max), 3'ss of exon 15
lower sequence: Vv19s0085g00870.t01 (Vitis vinifera), 3'ss of exon 14
-----ttttcctttatttttctgtttgcaaa-----tatagcaaga-tggataagtaggtct--------agtaa--caaatg------gtaatagttctgactattcaaatcc-------------tttttatctgaagGGAGCAAAAGTAATTCTTGGGGGTAAAAGACATAGCCTTGGACTTACTTTTTATGAACCCACAGTCATCAGTGATGTCAACAGTGATATGCACATATCAA
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gtatgttttttctcatctctaccattgaaaagtacctacaattggaataaatgaggacacctttctcaacagcaaagcaaattttttatgcaataactccaataatccatctctgaaaaatatatgattgttatgt-aagGGAGCAAAACTCCTCCTTGGGGGTAAAAGACACAATCTGGGGATGACTTTTTATGAGCCCACAGTAATCGGTGATGTCAACAACAAGATGCTTATATCAA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.aggtctagtaacaaatggtaatagttctgactattcaaatcctttttatctgaagGGAGCAAAAGTAATTCTTGGGGGTAAAAGACATAGCCTTGGACTTACTTTTTATGAACCCACAGTCATCAGTGATGTCAACAGTGATATGCACATATCAA
tcctttttatct CT-rich tract
tattcaaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ttttcctttatttttctgtttgcaaatatagcaagatggataagtaggtctagtaacaaatggtaatagttctgactattcaaatcctttttatctgaagGGAGCAAAAGTAATTCTTGGGGGTAAAAGACATAGCCTTGGACTTACTTTTTATGAACCCACAGTCATCAGTGATGTCAACAGTGATATGCACATATCAA
- - - - - - - - tgtttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - gtaacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttctgac