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...tattctgttcccaggcaatgtgcttattttctactgcggtttttatcttgatatataaatttatttatgatataatgaaattctctctggctaatggcagGTCCACGAGAAGGAAGTTATAGGTGTCACTCATCATCCCCATAGGAATCTTGTTGCAACTTTTAGTGAAGACTGCACAATGAAGTTGTGGAAGCCATGAA
species | Glycine max |
transcript | GLYMA08G13560.1 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: TATATACTGCTTCAAGCTATCTATCTGGCAAATTGGAGCATCTAATGAAG GTCCACGAGAAGGAAGTTATAGGTGTCACTCATCATCCCCATAGGAATCTTEST: gi|193348923|gb|FK315241.1|FK315241
genomic: TATATACTGCTTCA-GCTATCTATCTGGCAAATTGGAGCATCTAATGAAGgtatgtataa ... ctaatggcagGTCCACGAGAAGGAAGTTATAGGTGTCACTCATCATCCCCATAGGAATCTT
EST: ACTGCTTCAGCTATCTATCTGGCAAATTGGAGCATCTAATGAAG GTCCACGAGAAGGAAGTTATAGGTGTCACTCATCATCCCCATAGGAATCTTEST: gi|193356459|gb|FK320918.1|FK320918
genomic: ACTGCTTCAGCTATCTATCTGGCAAATTGGAGCATCTAATGAAGgtatgtataa ... ctaatggcagGTCCACGAGAAGGAAGTTATAGGTGTCACTCATCATCCCCATAGGAATCTT
EST: ATATATACTGCTTCAGCTATCTATCTGGCAAATTGGAGCATCTAATGAAG GTCCACGAGAAGGAAGTTATAGGTGTCACTCATCATCCCCATAGGAATCTTEST: gi|208212605|gb|GE011888.1|GE011888
genomic: ATATATACTGCTTCAGCTATCTATCTGGCAAATTGGAGCATCTAATGAAGgtatgtataa ... ctaatggcagGTCCACGAGAAGGAAGTTATAGGTGTCACTCATCATCCCCATAGGAATCTT
EST: TGGCGAAATTGGAGCANCTAATGAAG G-CCACGAGAAGGAAGTTATAGGTGTCACTCATCATCCCCATAGGAATCTT
genomic: TGGC-AAATTGGAGCATCTAATGAAGgtatgtataa ... ctaatggcagGTCCACGAGAAGGAAGTTATAGGTGTCACTCATCATCCCCATAGGAATCTT
tcttgatatataaatttatttatgatataatgaaattctctctggctaatggcagGTCCACGAGAAGGAAGTTATAGGTGTCACTCATCATCCCCATAGGAATCTTGTTGCAACTTTTAGTGAAGACTGCACAATGAAGTTGTGGAAGCCATGAA
ggctaat putative branch site (score: 3)
atatataaatttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tattctgttcccaggcaatgtgcttattttctactgcggtttttatcttgatatataaatttatttatgatataatgaaattctctctggctaatggcagGTCCACGAGAAGGAAGTTATAGGTGTCACTCATCATCCCCATAGGAATCTTGTTGCAACTTTTAGTGAAGACTGCACAATGAAGTTGTGGAAGCCATGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - ctgttcc
- - - - - - - -caatgtg
- - - - - - - - - - - - - - - ctactgc