Sequence
atgc intronic sequence ATGC exonic sequence...atatggacactatatgtgcacccacaatactttttggatgtttatttagataatggaatgtatatattattagacgactaatctgtttatttaattgcagATAGTTGATGCCTTGGAGCTTAGCAGACTGACCATGAATACTATAAAACAAAATCTTTGGTGGGCTTTCATATACAACATT
Basic information
species | Glycine max |
transcript | GLYMA08G07710.1 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA08G07710.1 (Glycine max), 3'ss of exon 15
lower sequence: Vv12s0142g00330.t01 (Vitis vinifera), 3'ss of exon 7
atatggacactatatgtgcacccacaatactttttggatgtttatttagataatggaatgtatatattatta--gacgactaatctgtttatttaattgcagATAGTTGATGCCTTGGAGCTTAGCAGACTGACCATGAATACTATAAAACAAAATCTTTGGTGGGCTTTCATATACAACATT
|| | | || | | | | ||| | | | ||| || |||| | || | | | | ||| | | ||||| | ||||||| || || || |||||||| |||||||| || | |||||||||||||||||||| || ||| ||||||
-tacctctggtttg-atgtggatgcttctcatcctaaatgagtttctggatttagggccctatactgtgctatgaaaaattgacctggatctccttgtgcagTTGCTTGATGCTTTCGAACTAAGCAGACTAACCATGAAGACCGTGAAACAAAATCTTTGGTGGGCCTTTGCATATAACATT
upper sequence: GLYMA08G07710.1 (Glycine max), 3'ss of exon 15
lower sequence: PP1S19_275V6.1 (Physcomitrella patens), 3'ss of exon 16
------------------------------------------------------------------------------------------------atatggacactatatgtgcacccacaatactttt-----tggatgtttatttagataatggaatgtatatattattagacgactaatctgtttatttaattgcagATAGTTGATGCCTTGGAGCTTAGCAGACTGACCATGAATACTATAAAACAAAATCTTTGGTGGGCTTTCATATACAACATT
| || | | | | | | || || | || | | | | |||| |||| | || | | | | || | || ||||| | |||||||| | || | ||| | | || | || | || || || |||||||||||||| |||||||||||||||
gtttgtgaaatagtttgtgaggttttacttcgtctccaacgtctactttgagtgtctgcaaaattggcgtcttttacatgctcttagtgaaatcttacattg-cgttctgtatccaggtctgatcttgttgctgtcagttctctttttatgcaatgcttaaaaaatgccttcccaggttacaactatgagattg--tgcagGTTGTTGATGCTATCGAATTGAGCCGGTTAACGCTTAAGAAAATCAAGCAGAATCTTTGGTGGGCATTCATATACAACATT atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttagataatggaatgtatatattattagacgactaatctgtttatttaattgcagATAGTTGATGCCTTGGAGCTTAGCAGACTGACCATGAATACTATAAAACAAAATCTTTGGTGGGCTTTCATATACAACATT
tttattt CT-rich tract
taatggaatgtatata TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
atatggacactatatgtgcacccacaatactttttggatgtttatttagataatggaatgtatatattattagacgactaatctgtttatttaattgcagATAGTTGATGCCTTGGAGCTTAGCAGACTGACCATGAATACTATAAAACAAAATCTTTGGTGGGCTTTCATATACAACATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - cacccac
- - - - - - - - - - - - - - - - - - - - - - - - - - - -gaatgta