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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atgaaagcattatttcatgtcatttcttacccttcatattgcaatctcttttatatacctttcttttaatttattatttcccttttgaactactgaacagGCAGCTAGAAAAATTGGCTTTCCTGTACTCTATGGGGACGGATCACGTCCAGATGTTCTTCACTCTGCCGGTGTCTCTTCTCCAAAAGCTTTCATGATTA

Basic information

species Glycine max
transcript GLYMA08G06890.3
intron # 15
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9900248|gb|BE609216.1|BE609216
EST:     AAGTAGGATGGCCTTACGTGGCATTTGATCTTGACCCCTCAGTAGTAAAG                         GCAGCTAGAAAAATTGGCTTTCCTGTACTCTATGGGGACGGATCACGTCCA
genomic: AAGTAGGATGGCCTTACGTGGCATTTGATCTTGACCCCTCAGTAGTAAAGgtcagtgtat ... tactgaacagGCAGCTAGAAAAATTGGCTTTCCTGTACTCTATGGGGACGGATCACGTCCA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctcttttatatacctttcttttaatttattatttcccttttgaactactgaacagGCAGCTAGAAAAATTGGCTTTCCTGTACTCTATGGGGACGGATCACGTCCAGATGTTCTTCACTCTGCCGGTGTCTCTTCTCCAAAAGCTTTCATGATTA
                  ttttaat  putative branch site (score: 3)
     ttatatacctttcttt  TA-rich tract