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...tagttcgttggtatttgacctaggaataaagattacttggtgagggtttgaatctgtggcttcatcataaatctaatgaatttattcgctgtctttttagGATTGTTAAGGGGATAAGGTCAGATGTTTCGAATGTTGTCCACGGTGATGAATTTGAGTACAATGATCCTGTGGATGGTTCCATCTCATCACATCAGGGA
species | Glycine max |
transcript | GLYMA08G04890.1 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: CTGATGGCATATTTGGTCAAGCTGCAGTCCTCACTTTCAGAAGTCAATCA GATTGTTAAGGGGATAAGGTCAGATGTTTCGAATGTTGTCCACGGTGATGAEST: gi|58019793|gb|CX706535.1|CX706535
genomic: CTGATGGCATATTTGGTCAAGCTGCAGTCCTCACTTTCAGAAGTCAATCAgtaagttaat ... gtctttttagGATTGTTAAGGGGATAAGGTCAGATGTTTCGAATGTTGTCCACGGTGATGA
EST: CTGATGGCATATTTGGTCAAGCTGCAGTCCTCACTTTCAGAAGTCAATCA GATTGTTAAGGGGATAAGGTCAGATGTTTCGAATGTTGTCCACGGTGATGAEST: gi|19269460|gb|BM885716.1|BM885716
genomic: CTGATGGCATATTTGGTCAAGCTGCAGTCCTCACTTTCAGAAGTCAATCAgtaagttaat ... gtctttttagGATTGTTAAGGGGATAAGGTCAGATGTTTCGAATGTTGTCCACGGTGATGA
EST: CTGATGGCATATTTGGTCAAGCTGCAGTCCTCACTTTCAGAAGTCAATCA GATTGTTAAGGGGATAAGGTCAGATGTTTCGAATGTTGTCCACGGTGATGAEST: gi|6567204|gb|AW234815.1|AW234815
genomic: CTGATGGCATATTTGGTCAAGCTGCAGTCCTCACTTTCAGAAGTCAATCAgtaagttaat ... gtctttttagGATTGTTAAGGGGATAAGGTCAGATGTTTCGAATGTTGTCCACGGTGATGA
EST: CTGATGGCATATTTGGTCAAGCTGCAGTCCTCACTTTCAGAAGTCAATCA GATTGTTAAGGGGATAAGGTCAGATGTTTCGAATGTTGTCCACGGTGATGAEST: gi|12690328|gb|BG156664.1|BG156664
genomic: CTGATGGCATATTTGGTCAAGCTGCAGTCCTCACTTTCAGAAGTCAATCAgtaagttaat ... gtctttttagGATTGTTAAGGGGATAAGGTCAGATGTTTCGAATGTTGTCCACGGTGATGA
EST: CTGATGGCATATTTGGTCAAGCTGCAGTCCTCACTTTCAGAAGTCAATCA GATTGTTAAGGGGATAAGGTCAGATGTTTCGAATGTTGTCCACGGTGATGAEST: gi|6725125|gb|AW309524.1|AW309524
genomic: CTGATGGCATATTTGGTCAAGCTGCAGTCCTCACTTTCAGAAGTCAATCAgtaagttaat ... gtctttttagGATTGTTAAGGGGATAAGGTCAGATGTTTCGAATGTTGTCCACGGTGATGA
EST: TCAGAAGTCAATCA GATTGTTAAGGGGATAAGGTCAGATGTTTCGAATGTTGTCCACGGTGATGAEST: gi|58015854|gb|CX702596.1|CX702596
genomic: TCAGAAGTCAATCAgtaagttaat ... gtctttttagGATTGTTAAGGGGATAAGGTCAGATGTTTCGAATGTTGTCCACGGTGATGA
EST: CTGATGGCATATTTGGTCAAGCTGCAGTCCTCACTTTCAGAAGTCAATCA GATTGTTAAGGGGATAAGGTCAGATGTTTCGAATGTTGTCCACGGTGATGAEST: gi|57574755|gb|CX547730.1|CX547730
genomic: CTGATGGCATATTTGGTCAAGCTGCAGTCCTCACTTTCAGAAGTCAATCAgtaagttaat ... gtctttttagGATTGTTAAGGGGATAAGGTCAGATGTTTCGAATGTTGTCCACGGTGATGA
EST: CTGATGGCATATTTGGTCAAGCTGCAGTCCTCACTTTCAGAAGTCAATCA GATTGTTAAGGGGATAAGGTCAGATGTTTCGAATGTTGTCCACGGTGATGAEST: gi|120530798|gb|EH258931.1|EH258931
genomic: CTGATGGCATATTTGGTCAAGCTGCAGTCCTCACTTTCAGAAGTCAATCAgtaagttaat ... gtctttttagGATTGTTAAGGGGATAAGGTCAGATGTTTCGAATGTTGTCCACGGTGATGA
EST: ATTTGGTCAAGCTGCAGTCCTCACTTTCAGAAGTCAATCA GATTGTTAAGGGGATAAGGTCAGATGTTTCGAATGTTGTCCACGGTGATGA
genomic: ATTTGGTCAAGCTGCAGTCCTCACTTTCAGAAGTCAATCAgtaagttaat ... gtctttttagGATTGTTAAGGGGATAAGGTCAGATGTTTCGAATGTTGTCCACGGTGATGA
gtttgaatctgtggcttcatcataaatctaatgaatttattcgctgtctttttagGATTGTTAAGGGGATAAGGTCAGATGTTTCGAATGTTGTCCACGGTGATGAATTTGAGTACAATGATCCTGTGGATGGTTCCATCTCATCACATCAGGGA
atctaat putative branch site (score: 3)
ttcgctgtcttttt putative PPT
atcataaatctaatga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tagttcgttggtatttgacctaggaataaagattacttggtgagggtttgaatctgtggcttcatcataaatctaatgaatttattcgctgtctttttagGATTGTTAAGGGGATAAGGTCAGATGTTTCGAATGTTGTCCACGGTGATGAATTTGAGTACAATGATCCTGTGGATGGTTCCATCTCATCACATCAGGGA
- - - gttggta
- - - - - - - - - - - ggaataaa
- - - - - - - - - - - - - - - - - -cttggtg
- - - - - - - - - - - - - - - - - - - - - -gggtttg
- - - - - - - - - - - - - - - - - - - - - - - - - - tctgtgg