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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatcagcatctcgtcgtcttgttctattttttttagatgaagtttttattaattgcacttgtttttattctcagGTTGGATTGGAATTGTTCCCAAGAGATTATGACATGGAGTCCAGTAAGCCCTTTGGGAAAAATGATATTATCAGCCTGGTTCCTGTTTGCAAG

Basic information

species Glycine max
transcript GLYMA07G03250.1
intron # 15
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G03250.1 (Glycine max), 3'ss of exon 15
lower sequence: Vv09s0002g07530.t01 (Vitis vinifera), 3'ss of exon 14
gtatcagcatctcgtcgtcttgttctattttttttagatgaagtttttattaattgcacttgtttttattct--cagGTTGGATTGGAATTGTTCCCAAGAGATTATGACATGGAGTCCAGTAAGCCCTTTGGGAAAAATGATATTATCAGCCTGGTTCCTGTTTGCAAG
||||      ||| | | ||  |||||  | |||    ||     |  |||| ||  |||     ||||| |  |||||||| ||||| ||| | |||||||||||||||||||| | |   || |||||  ||||| |||| ||||||||| |||||||||| || |||
gtat-gatgcctctttgactgcttctagctatttatcttgttcaatacatta-ttttactaaaaattattttggcagGTTGGGTTGGAGTTGGTTCCAAGAGATTATGACATGGAATGCCCAAACCCCTTCAGGAAACATGACATTATCAGCATGGTTCCTGTGTGTAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|213599768|gb|DB968418.1|DB968418
EST:     AATTTCAACATTTAAGGAAGTTGTCGATTCTCAGAGGGCTCTGTCACAAG                         GTTGGATTGGAATTGTTCCCAAGAGATTATGACATGGAGTCCAGTAAGCCC
genomic: AATTTCAACATTTAAGGAAGTTGTCGATTCTCAGAGGGCTCTGTCACAAGgtatcagcat ... ttattctcagGTTGGATTGGAATTGTTCCCAAGAGATTATGACATGGAGTCCAGTAAGCCC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttctattttttttagatgaagtttttattaattgcacttgtttttattctcagGTTGGATTGGAATTGTTCCCAAGAGATTATGACATGGAGTCCAGTAAGCCCTTTGGGAAAAATGATATTATCAGCCTGGTTCCTGTTTGCAAG
                           tattaat  putative branch site (score: 2)
                                      cttgtttttattctc  putative PPT
     tattttttttagatga  TA-rich tract