1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
...ccatttgttttctctcttggtgttttctttcctgctaatttcttgggtttcaaataaagcatagtaattctcttctgataatttgtttatatcttgttagATTCCAACTCAGCTAATCGTGTGGGATAAACTCCCTCGCAATGCCATGGGGAAG
species | Glycine max |
transcript | GLYMA07G02180.1 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: GAATTATCCAACTGGGCCAAAGACAAAATTGCACCTTACAAG ATTCCAACTCAGCTAATCGTGTGGGATAAACTCCCTCGCAATGCCATGGGGEST: gi|254347505|gb|GR853754.1|GR853754
genomic: GAATTATCCAACTGGGCCAAAGACAAAATTGCACCTTACAAGgtatggcagc ... atcttgttagATTCCAACTCAGCTAATCGTGTGGGATAAACTCCCTCGCAATGCCATGGGG
EST: GCCTAGAAGAATTATCCAACTGGGCCAAAGACAAAATTGCACCTTACAAG ATTCCAACTCAGCTAATCGTGTGGGATAAACTCCCTCGCAATGCCATGGGGEST: gi|6952008|gb|AW424076.1|AW424076
genomic: GCCTAGAAGAATTATCCAACTGGGCCAAAGACAAAATTGCACCTTACAAGgtatggcagc ... atcttgttagATTCCAACTCAGCTAATCGTGTGGGATAAACTCCCTCGCAATGCCATGGGG
EST: GAATTATCCAACTGGGCCAAAGACAAAATTGCACCTTACAAG ATTCCAACTCAGCTAATCGTGTGGGATAAACTCCCTCGCAATGCCATGGGGEST: gi|22933398|gb|BU550537.1|BU550537
genomic: GAATTATCCAACTGGGCCAAAGACAAAATTGCACCTTACAAGgtatggcagc ... atcttgttagATTCCAACTCAGCTAATCGTGTGGGATAAACTCCCTCGCAATGCCATGGGG
EST: GCCTAGAAGAATTATCCAACTGGGCCAAAGACAAAATTGCACCTTACAAG ATTCCAACTCAGCTAATCGTGTGGGATAAACTCCCTCGCAATGCCATGGGGEST: gi|254342855|gb|GR859017.1|GR859017
genomic: GCCTAGAAGAATTATCCAACTGGGCCAAAGACAAAATTGCACCTTACAAGgtatggcagc ... atcttgttagATTCCAACTCAGCTAATCGTGTGGGATAAACTCCCTCGCAATGCCATGGGG
EST: GCCTAGAAGAATTATCCAACTGGGCCAAAGACAAAATTGCACCTTACAAG ATTCCAACTCAGCTAATCGTGTGGGATAAACTCCCTCGCAATGCCATGGGGEST: gi|254322526|gb|GR837940.1|GR837940
genomic: GCCTAGAAGAATTATCCAACTGGGCCAAAGACAAAATTGCACCTTACAAGgtatggcagc ... atcttgttagATTCCAACTCAGCTAATCGTGTGGGATAAACTCCCTCGCAATGCCATGGGG
EST: GCCTAGAAGAATTATCCAACTGGGCCAAAGACAAAATTGCACCTTACAAG ATTCCAACTCAGCTAATCGTGTGGGATAAACTCCCTCGCAATGCCATGGGGEST: gi|254317383|gb|GR826328.1|GR826328
genomic: GCCTAGAAGAATTATCCAACTGGGCCAAAGACAAAATTGCACCTTACAAGgtatggcagc ... atcttgttagATTCCAACTCAGCTAATCGTGTGGGATAAACTCCCTCGCAATGCCATGGGG
EST: GCCTAGAAGAATTATCCAACTGGGCCAAAGACAAAATTGCACCTTACAAG ATTCCAACTCAGCTAATCGTGTGGGATAAACTCCCTCGCAATGCCATGGGGEST: gi|254342856|gb|GR859018.1|GR859018
genomic: GCCTAGAAGAATTATCCAACTGGGCCAAAGACAAAATTGCACCTTACAAGgtatggcagc ... atcttgttagATTCCAACTCAGCTAATCGTGTGGGATAAACTCCCTCGCAATGCCATGGGG
EST: GCCTAGAAGAATTATCCAACTGGGCCAAAGACAAAATTGCACCTTACAAG ATTCCAACTCAGCTAATCGTGTGGGATAAACTCCCTCGCAATGCCATGGGGEST: gi|254348419|gb|GR852098.1|GR852098
genomic: GCCTAGAAGAATTATCCAACTGGGCCAAAGACAAAATTGCACCTTACAAGgtatggcagc ... atcttgttagATTCCAACTCAGCTAATCGTGTGGGATAAACTCCCTCGCAATGCCATGGGG
EST: GCCTAGAAGAATTATCCAACTGGGCCAAAGACAAAATTGCACCTTACAAG ATTCCAACTCAGCTAATCGTGTGGGATAAACTCCCTCGCAATGCCATGGGGEST: gi|254321455|gb|GR824772.1|GR824772
genomic: GCCTAGAAGAATTATCCAACTGGGCCAAAGACAAAATTGCACCTTACAAGgtatggcagc ... atcttgttagATTCCAACTCAGCTAATCGTGTGGGATAAACTCCCTCGCAATGCCATGGGG
EST: GCCTAGAAGAATTATCCAACTGGGCCAAAGACAAAATTGCACCTTACAAG ATTCCAACTCAGCTAATCGTGTGGGATAAACTCCCTCGCAATGCCATGGGGEST: gi|254347506|gb|GR853755.1|GR853755
genomic: GCCTAGAAGAATTATCCAACTGGGCCAAAGACAAAATTGCACCTTACAAGgtatggcagc ... atcttgttagATTCCAACTCAGCTAATCGTGTGGGATAAACTCCCTCGCAATGCCATGGGG
EST: GCCTAGAAGAATTATCCAACTGGGCCAAAGACAAAATTGCACCTTACAAG ATTCCAACTCAGCTAATCGTGTGGGATAAACTCCCTCGCAATGCCATGGGGEST: gi|254321454|gb|GR824771.1|GR824771
genomic: GCCTAGAAGAATTATCCAACTGGGCCAAAGACAAAATTGCACCTTACAAGgtatggcagc ... atcttgttagATTCCAACTCAGCTAATCGTGTGGGATAAACTCCCTCGCAATGCCATGGGG
EST: GCCTAGAAGAATTATCCAACTGGGCCAAAGACAAAATTGCACCTTACAAG ATTCCAACTCAGCTAATCGTGGTGGGATAAACTCCCTCGCA-TGCCATGGGEST: gi|254348418|gb|GR852097.1|GR852097
genomic: GCCTAGAAGAATTATCCAACTGGGCCAAAGACAAAATTGCACCTTACAAGgtatggcagc ... atcttgttagATTCCAACTCAGCTAATCGTG-TGGGATAAACTCCCTCGCAATGCCATGGG
EST: GCCTAGAAGAATTATCCAACTGGGCCAAAGACAAAATTGCACCTTACAAG ATTCCAACTCAGCTAATCGTGTGGGATAAACTCCCTCGCAATGCCATGGGG
genomic: GCCTAGAAGAATTATCCAACTGGGCCAAAGACAAAATTGCACCTTACAAGgtatggcagc ... atcttgttagATTCCAACTCAGCTAATCGTGTGGGATAAACTCCCTCGCAATGCCATGGGG
ggtttcaaataaagcatagtaattctcttctgataatttgtttatatcttgttagATTCCAACTCAGCTAATCGTGTGGGATAAACTCCCTCGCAATGCCATGGGGAAG
ttctgat putative branch site (score: 3)
tcttgtt putative PPT
ataatttgtttatatc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccatttgttttctctcttggtgttttctttcctgctaatttcttgggtttcaaataaagcatagtaattctcttctgataatttgtttatatcttgttagATTCCAACTCAGCTAATCGTGTGGGATAAACTCCCTCGCAATGCCATGGGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT