Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   
21  
 5'  3'   		22  
 5'  3'   		23  
 5'  3'   		24  
 5'  3'   		25  
 5'  3'   		26  
 5'  3'   		27  
 5'  3'   		28  
 5'  3'   		29  
 5'  3'   		30  
 5'  3'   		31  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtatcattttatgcatctatctttttgttatttttagttttaaggcatcctttctaacagtaaaaaatttgcagGTACGGCGGCTATCGGCCTGTGAAACTATGGGCTCTGCCACAACAATTTGCAGTGATAAGACAGGAACATTGACCTTAAATCAG

Basic information

species Glycine max
transcript GLYMA07G00630.2
intron # 15
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA07G00630.1 (Glycine max), 3'ss of exon 18
lower sequence: LOC_Os04g51610.3 (Oryza sativa), 3'ss of exon 16
gtaagtatcattttatgcatc-tatctttttgttatttttagttttaaggcatcctttctaacagtaaaaaatttgcagGTACGGCGGCTATCGGCCTGTGAAACTATGGGCTCTGCCACAACAATTTGCAGTGATAAGACAGGAACATTGACCTTAAATCAG
||| |     || |  | ||  |   |  ||||||||  |      || |||| || |  |   |   ||   ||  ||||  || |||| || || |||||||||||||| || ||||||||||||||||| || |||||||||||  |||| || ||||||
gtatgctcgcttgttggtattgtgcttgcttgttattcctg--caaaatgcattctcttgagtgggttaatgcttatagGTCAGGAGGCTCTCTGCATGTGAAACTATGGGTTCAGCCACAACAATTTGCAGCGACAAGACAGGAACGCTGACTTTGAATCAG

upper sequence: GLYMA07G00630.1 (Glycine max), 3'ss of exon 18
lower sequence: GRMZM2G391042_T02 (Zea mays), 3'ss of exon 16
----gtaagtatcattttatgcatctatctttttgt-----tatttttagt-tttaaggc-atcctttctaacagtaaaaaatttgcagGTACGGCGGCTATCGGCCTGTGAAACTATGGGCTCTGCCACAACAATTTGCAGTGATAAGACAGGAACATTGACCTTAAATCAG
    ||    | | || ||| | |   | || || |     ||  |      | ||| || ||     || ||     |     |  ||||  || |||| || || || ||||| ||||| |||||||||||||| |||||||| ||||| || || ||||| |||||||||
gtgtgttcccaactttctataccttggttttgttatgctactagctccgacatctaatgctatgaacactcacttcctatggaatatagGTGAGGAGGCTTTCTGCATGCGAAACGATGGGTTCTGCCACAACAATCTGCAGTGACAAGACTGGCACCTTGACGTTAAATCAG

upper sequence: GLYMA07G00630.1 (Glycine max), 3'ss of exon 18
lower sequence: GRMZM2G140328_T02 (Zea mays), 3'ss of exon 16
----gtaagtatcattttatgcatctatctttttgttatttttagttt--taaggcatccttt-----ctaacagtaaaaaatttgcagGTACGGCGGCTATCGGCCTGTGAAACTATGGGCTCTGCCACAACAATTTGCAGTGATAAGACAGGAACATTGACCTTAAATCAG
    ||    | | || ||| | |   | || |  |  |  ||  |     |  | || ||||     || ||     |     || ||||  || |||| || || |||||||| ||||| |||||||||||||| |||||||| ||||| || || || || |||||||||
gtatgttcccaactttctataccttggttttgtcatactacttgatccgacattgaatgctttgcacgctcacttcctatggaatgtagGTCAGGAGGCTTTCTGCATGTGAAACGATGGGTTCTGCCACAACAATCTGCAGTGACAAGACTGGCACCTTAACTTTAAATCAG

upper sequence: GLYMA07G00630.1 (Glycine max), 3'ss of exon 18
lower sequence: Vv09s0018g02130.t01 (Vitis vinifera), 3'ss of exon 17
gtaagtatcattttatgc--atctatctttttgttatttttagttttaaggcatc--ctttctaacagtaaa--aaatttgcagGTACGGCGGCTATCGGCCTGTGAAACTATGGGCTCTGCCACAACAATTTGCAGTGATAAGACAGGAACATTGACCTTAAATCAG
|| |  ||   |||   |  |  ||    ||  | || | | || | |          ||| |||||  |      || ||||||| ||  |||| || ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||| ||| ||
gtcatcatttctttcctccaaaataatccttaataatatcttgtctcattattctagttttataacaccattttggatatgcagGTGCGTAGGCTTTCAGCCTGTGAAACTATGGGCTCTGCAACAACAATTTGCAGTGATAAGACTGGAACATTAACCTTGAATAAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193671067|gb|FK608345.1|FK608345
EST:     CTTGGCATACTCAATGCGGAAAATGATGGCAGACAAGGCCTTG                         GTACGGCGGCTATCGGCCTGTGAAACTATGGGCTCTGCCACAACAATTTGC
genomic: CTTGGCATACTCAATGCGGAAAATGATGGCAGACAAGGCCTTGgtaagtatca ... aaatttgcagGTACGGCGGCTATCGGCCTGTGAAACTATGGGCTCTGCCACAACAATTTGC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctttttgttatttttagttttaaggcatcctttctaacagtaaaaaatttgcagGTACGGCGGCTATCGGCCTGTGAAACTATGGGCTCTGCCACAACAATTTGCAGTGATAAGACAGGAACATTGACCTTAAATCAG
                                ttctaac  putative branch site (score: 1)
     ttgttatttttagttt  TA-rich tract