Sequence
atgc intronic sequence ATGC exonic sequence...atgttttttggccattcttacaccaccttgcttggtggttatattgcacctttctgcatacatataggatctctgatataaatgaattgtataattacagCTACGGAAAATGCTTGATCTCCTTGTTCATGCATCCCAATGTCGTTCTGCACATTGCCAATATCCCAATTGTCGCAAGGTGAAGGGACTTTTCCGCCATG
Basic information
species | Glycine max |
transcript | GLYMA07G00230.1 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA07G00230.1 (Glycine max), 3'ss of exon 15
lower sequence: AT1G79000.1 (Arabidopsis thaliana), 3'ss of exon 16
--atgttttttggccattcttacaccaccttgcttggtggttatattgcacctt---tctgcatacatatagga-----tctctgatataaatgaattgtataattacagCTACGGAAAATGCTTGATCTCCTTGTTCATGCATCCCAATGTCGTTCTGCACATTGCCAATATCCCAATTGTCGCAAGGTGAAGGGACTTTTCCGCCATG
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gtatacactatactgttcctttctaaaactgatggtgcttctctcttggtcctgaaatttgtatgcaaatagtaacattttttttttgttctcttcttttggttttgcagCTTAGGAAAATGCTCGATCTTCTGGTACATGCATCACAATGTCGTTCGGCACATTGTCAATATCCGAATTGCCGGAAAGTGAAAGGGCTATTCCGACATG
upper sequence: GLYMA07G00230.1 (Glycine max), 3'ss of exon 15
lower sequence: Vv09s0054g01780.t01 (Vitis vinifera), 3'ss of exon 14
------atgttttttggccattcttacaccac-cttgcttggtggttatattg-cacctttctgcatacatataggatctctgatataaatgaattgtataat--tacagCTACGGAAAATGCTTGATCTCCTTGTTCATGCATCCCAATGTCGTTCTGCACATTGCCAATATCCCAATTGTCGCAAGGTGAAGGGACTTTTCCGCCATG
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agagaaatgaacatgggggat-cttgctctgtgcatgcattattggaatattatcatctttctacaaaggc---------ctgacattatttggttatttgacactgcagCTAAGAAAAATGCTTGATCTACTGGTGCATGCATCTCAATGCCGTTCTCCACATTGTCAATATCCAAACTGTCGCAAAGTGAAGGGCCTTTTCCGCCATGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|151410575|gb|EV280390.1|EV280390EST: GAGTATCGCAG CTACGGAAAATGCTTGATCTCCTTGTTCATGCATCCCAATGTCGTTCTGCA
genomic: GAGTATCGCAGgtgttgtaca ... ataattacagCTACGGAAAATGCTTGATCTCCTTGTTCATGCATCCCAATGTCGTTCTGCA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gcacctttctgcatacatataggatctctgatataaatgaattgtataattacagCTACGGAAAATGCTTGATCTCCTTGTTCATGCATCCCAATGTCGTTCTGCACATTGCCAATATCCCAATTGTCGCAAGGTGAAGGGACTTTTCCGCCATG
ctctgat putative branch site (score: 4)
tgatataaatgaattg TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
atgttttttggccattcttacaccaccttgcttggtggttatattgcacctttctgcatacatataggatctctgatataaatgaattgtataattacagCTACGGAAAATGCTTGATCTCCTTGTTCATGCATCCCAATGTCGTTCTGCACATTGCCAATATCCCAATTGTCGCAAGGTGAAGGGACTTTTCCGCCATG
- - - - - -ccattct
- - - - - - - - - - - ccacctt
- - - - - - - - - - - - - - - - tggtggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - -gcataca