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gtcagtgtaacagtattttgctttagatttttctacggtgacgtattaggtatatacctctaaaataccttatttatacccgatcacaatagtcaaagttgcagatataacccttctgcttttcagttcaatataagttgcaactaagacaactagtacatttttgctgattaatacaataaacatgcagATTCCTATAGGAGCTAGGTTTGTGGGAATTCCAGGAACAGAGTCTGCTGAAAACCCTACTGGGTTTATGGTAGAAGTATACTGGGAACAAGATGATACTG
species | Glycine max |
transcript | GLYMA06G20360.1 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: CTGAAGGGAGACTAGTGACCCTGACCTTAACATCTGGGGAATCTGTGCAG ATTCCTNTAGGAGCTAGGTTTGTEST: gi|193629484|gb|FK575940.1|FK575940
genomic: CTGAAGGGAGACTAGTGACCCTGACCTTAACATCTGGGGAATCTGTGCAGgtcagtgtaa ... aaacatgcagATTCCTATAGGAGCTAGGTTTGT
EST: CTGAAGGGAGACTAGTGACCCTGACCTTAACATCTGGGGAATCTGTGCAG ATTCCTATAGGAGCTAGGTTTGTGGGAATTCCAGGAACAGAGTCTGCTGAAEST: gi|120494823|gb|EH222990.1|EH222990
genomic: CTGAAGGGAGACTAGTGACCCTGACCTTAACATCTGGGGAATCTGTGCAGgtcagtgtaa ... aaacatgcagATTCCTATAGGAGCTAGGTTTGTGGGAATTCCAGGAACAGAGTCTGCTGAA
EST: CTGAAGGGAGACTAGTGACCCTGACCTTAACATCTGGGGAATCTGTGCAG ATTCCTATAGGAGCTAGGTTTGTGGGAATTCCAGGAACAGAGTCTGCTGAAEST: gi|51343333|gb|CO984066.1|CO984066
genomic: CTGAAGGGAGACTAGTGACCCTGACCTTAACATCTGGGGAATCTGTGCAGgtcagtgtaa ... aaacatgcagATTCCTATAGGAGCTAGGTTTGTGGGAATTCCAGGAACAGAGTCTGCTGAA
EST: CTGAAGGGAGACTAGTGACCCTGACCTTAACATCTGGGGAATCTGTGCAG ATTCCTATAGGAGCTAGGTTTGTGGGAATTCCAGGAACAGAGTCTGCTGAAEST: gi|193656333|gb|FK602805.1|FK602805
genomic: CTGAAGGGAGACTAGTGACCCTGACCTTAACATCTGGGGAATCTGTGCAGgtcagtgtaa ... aaacatgcagATTCCTATAGGAGCTAGGTTTGTGGGAATTCCAGGAACAGAGTCTGCTGAA
EST: CTGAAGGGAGACTAGTGACCCTGACCTTAACATCTGGGGAATCTGTGCAG ATTCCTATAGGAGCTAGGTTTGTGGGAATTCCAGGAACAGAGTCTGCTGAAEST: gi|21676327|gb|BQ628678.1|BQ628678
genomic: CTGAAGGGAGACTAGTGACCCTGACCTTAACATCTGGGGAATCTGTGCAGgtcagtgtaa ... aaacatgcagATTCCTATAGGAGCTAGGTTTGTGGGAATTCCAGGAACAGAGTCTGCTGAA
EST: CTGAAGGGAGACTAGTGACCCTGACCTTAACATCTGGGGAATCTGTGCAG ATTCCTATAGGAGCTAGGTTTGTGGGAATTCCAGGAACAGAGTCTGCTGAAEST: gi|10846389|gb|BF069297.1|BF069297
genomic: CTGAAGGGAGACTAGTGACCCTGACCTTAACATCTGGGGAATCTGTGCAGgtcagtgtaa ... aaacatgcagATTCCTATAGGAGCTAGGTTTGTGGGAATTCCAGGAACAGAGTCTGCTGAA
EST: GTGACCCTGACCTTAACATCTGGGGAATCTGTGCAG ATTCCTATAGGAGCTAGGTTTGTGGGAATTCCAGGAACAGAGTCTGCTGAA
genomic: GTGACCCTGACCTTAACATCTGGGGAATCTGTGCAGgtcagtgtaa ... aaacatgcagATTCCTATAGGAGCTAGGTTTGTGGGAATTCCAGGAACAGAGTCTGCTGAA
agttgcaactaagacaactagtacatttttgctgattaatacaataaacatgcagATTCCTATAGGAGCTAGGTTTGTGGGAATTCCAGGAACAGAGTCTGCTGAAAACCCTACTGGGTTTATGGTAGAAGTATACTGGGAACAAGATGATACTG
gattaat putative branch site (score: 3)
attaatacaataaaca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagtgtaacagtattttgctttagatttttctacggtgacgtattaggtatatacctctaaaataccttatttatacccgatcacaatagtcaaagttgcagatataacccttctgcttttcagttcaatataagttgcaactaagacaactagtacatttttgctgattaatacaataaacatgcagATTCCTATAGGAGCTAGGTTTGTGGGAATTCCAGGAACAGAGTCTGCTGAAAACCCTACTGGGTTTATGGTAGAAGTATACTGGGAACAAGATGATACTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG