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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagaacatcatctccttatattcgaaagagcacaacacgatttatctgtatatatttgtcttttgtatgtcttccttctggatttttctgccacgttaaatctctcccttgttttctctatctatcagGATAGTTTTGGAAGATTGCATGACAGGGGAAAGGAAGCCCCAAAGCCAAACAAAACCTTAACTAAGCTTTTCCCAAATAAAGTGACTATTCACATGCCAC

Basic information

species Glycine max
transcript GLYMA06G17940.1
intron # 15
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G17940.1 (Glycine max), 3'ss of exon 15
lower sequence: LOC_Os03g22420.2 (Oryza sativa), 3'ss of exon 15
gtaagaacatcatctccttatattcgaaagagcacaacacgatttatctgtatatatttgtcttttgtatgtcttccttctggatttttctgccacgttaaatctctcccttgttttctctatctatcagGATAGTTTTGGAAGATTGCA-TGACAGGGGAAAGGAAGCCCCAAAGCCAAACAAAACCTTAACTAAGCTTTTCCCAAATAAAGTGACTATTCACATGCCAC--
                                  ||  || |||      ||| |  ||  | |   ||| | ||  ||  | |  | |        |||  |  || || ||  ||  |        | |   |  || ||   | | | ||| | |   || ||| |  ||||| | |  ||     |||||||||||||||||||||||||||| || ||    |||   
--------------------------------accattacaattg--tgatatcttcttagcatgcatatattttgatttggaacatgtgacgtgatttattttgctaccatgaattaacacaagggaatgcagGACTTTGATCGTGGAACTGATAAGAATAAAGAAACTTCAAAGGCGACGAAGCATCTAACTAAGCTTTTCCCAAATAAAGTGACGATCCAGCCACCAAAA

upper sequence: GLYMA06G17940.1 (Glycine max), 3'ss of exon 15
lower sequence: Vv17s0000g01550.t01 (Vitis vinifera), 3'ss of exon 15
gtaagaacatcatctccttatattcgaaagagcacaacacgatttatctgtatatatttgtcttttgtatgtcttccttctggatttttctgccacgttaaatctctcccttgttttctctatctatcagGATAGTTTTGGAAGATTGCATGACAGGGGAAAGGAAGCCCCAAAGCCAAACAAAACCTTAACTAAGCTTTTCCCAAATAAAGTGACTATTCACATGCCAC
                    |  ||  |  |     |   ||||    | | |||   |||  |    ||| ||   |    | ||  |||||   |  | ||  |   | |||| | ||  |   ||||||||| ||||| ||| ||||||||||||| ||||| |  || ||| |||  ||     |||| ||||||||||| ||||||||||| |||||||||||||
--------------------tgctcttattattttta---gattccattctgtatgactgtgat---catgcct--gtaaaagtttgatctgcagag--acatgacatgcatgttctttcgtttactcagGATAGCTTTGGGAGACTGCATGACAGGGGGAAGGACGTTCCCAAGACAACAAAGCTTCTAACAAAGCTTTTCCCCAATAAAGTGACCATTCACATGCCAC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192301513|gb|FG994753.1|FG994753
EST:     TTACAAAGTTCGGCAGTAATCAGACTGCTCTTCTTGATTTGGCTTTCCCC                         GATAGTTTTGGAAGATTGCATGACAGGGGAAAGGAAGCCCCAAAGCCAAAC
genomic: TTACAAAGTTCGGCAGTAATCAGACTGCTCTTCTTGATTTGGCTTTCCCCgtaagaacat ... tatctatcagGATAGTTTTGGAAGATTGCATGACAGGGGAAAGGAAGCCCCAAAGCCAAAC
EST: gi|192318121|gb|FK010945.1|FK010945
EST:     ATCAGACTGCTCTTCTTGATTTGGCTTTCCCC                         GATAGTTTTGGAAGATTGCATGACAGGGGAAAGGAAGCCCCAAAGCCAAAC
genomic: ATCAGACTGCTCTTCTTGATTTGGCTTTCCCCgtaagaacat ... tatctatcagGATAGTTTTGGAAGATTGCATGACAGGGGAAAGGAAGCCCCAAAGCCAAAC
EST: gi|17964497|gb|BM271231.1|BM271231
EST:     TTACAAAGTTCGGCAGTAATCAGACTGCTCTTCTTGATTTGGCTTTCCCC                         GATAGTTTTGGAAGATTGCATGACAGGGGAAAGGAAGCCCCAAAGCCAAAC
genomic: TTACAAAGTTCGGCAGTAATCAGACTGCTCTTCTTGATTTGGCTTTCCCCgtaagaacat ... tatctatcagGATAGTTTTGGAAGATTGCATGACAGGGGAAAGGAAGCCCCAAAGCCAAAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccttctggatttttctgccacgttaaatctctcccttgttttctctatctatcagGATAGTTTTGGAAGATTGCATGACAGGGGAAAGGAAGCCCCAAAGCCAAACAAAACCTTAACTAAGCTTTTCCCAAATAAAGTGACTATTCACATGCCAC
                           tctctcccttgttttc  CT-rich tract
        atttttct  TA-rich tract