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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatatttctttttttttttagtttttccttaagcttctgagttttgttgtttctttaaaaaaaattatgagtactactttattcatcagtttagttcaattcgtatgggggtaacaattggtacttttttttttttttgttttactgttctttaagGTGACCCCTGAAGATGCTCGCAAGCTCAACATCCCTCCAGAGTCTGTGAACAGAACTCCATCGGGTGAAACATTTGTTAAATCAAATTTGCAGAAG

Basic information

species Glycine max
transcript GLYMA06G16110.2
intron # 15
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G16110.1 (Glycine max), 3'ss of exon 15
lower sequence: LOC_Os11g08330.1 (Oryza sativa), 3'ss of exon 15
gtaaatatttctttttttttttagtttttccttaagcttctgagttttgttgtttctttaaaaaaaattatgagtactactttattcatcagtttagttcaattcgtatgggggtaacaattggtacttttttttttttttgttttactgttctttaagGTGACCCCTGAAGATGCTCGCAAGCTCAACATCCCTCCAGAGTCTGTGAACAGAACTCCATCGGGTGAAACATTTGTTAAATCAAATTTGCAGAAG
                                        | |   ||   ||||||| |      ||||| |   |||||  || || |||     ||   |   |     | ||  | | |||| |        |  |   |||||||||  | |||||  ||||||| ||||| ||||| |||||| | ||||||||   ||| |||| ||| ||||| |||||||||||||| ||| || || |||| |||
---------------------------------------gtaaaaatta--gtttcttaatttctgattataatacctactacatacagcagaaacatttgttctct-----gatattattgggtattcacaaagctcatg--tttactgtt--tgaagGTCCCCCCTGAGGATGCCCGCAAACTCAACCTGCCTCCAGAAAGTGTCAACAAAACCCCATCTGGTGAAACATTTGTGAAACCAGATGTGCAAAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgtatgggggtaacaattggtacttttttttttttttgttttactgttctttaagGTGACCCCTGAAGATGCTCGCAAGCTCAACATCCCTCCAGAGTCTGTGAACAGAACTCCATCGGGTGAAACATTTGTTAAATCAAATTTGCAGAAG
       gggtaac  putative branch site (score: 3)
                    tacttttttttttttt  putative PPT
                    tacttttttttttttt  TA-rich tract