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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtgaaagcataaagtgttggtaacttggtatcttcagaagcatatgctctgtcttttcctttcatacgactaagattgtgtttcattttttaagttttgccagtctcactgagcccctcctcctcatttaattcagTATGCAGCAAAAGAAGCTGAAATTGTTGCTCAAGCAGGACGGAAACATGCCATTACCCTCTCTACAAATATGGCAGGCAGGGGCACAGATATAATCCTTG

Basic information

species Glycine max
transcript GLYMA06G12320.1
intron # 15
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G12320.1 (Glycine max), 3'ss of exon 15
lower sequence: LOC_Os11g08980.1 (Oryza sativa), 3'ss of exon 16
gtttgtgaaagcataaagtgttggtaacttggtatcttcagaagcatatgctctgtcttttcctttcatacgactaagattgtgtttcattttttaagttttgccagtctcactgagcccctcctcctcatttaattcagTATGCAGCAAAAGAAGCTGAAATTGTTGCTCAAGCAGGACGGAAACATGCCATTACCCTCTCTACAAATATGGCAGGCAGGGGCACAGATATAATCCTTG
                                                                       |  | | ||  || ||  |  || || || | ||        |    |      | |||||     |||||||| |||| |||||||||||||||||| ||||| ||| |||||||||| |||||  | || || || ||||| ||||| || |||||||| ||  | |
-----------------------------------------------------------------------gtttgatatcttgcttt-tagttcaacttattcctcctcgtttatagctaattgcatcattctcaacagTATGCCGCAAGAGAAGCTGAAATTGTTGCACAAGCCGGAAGGAAACATGCTATTACAATTTCAACTAACATGGCTGGCAGAGGAACAGATATTATTTTAG

upper sequence: GLYMA06G12320.1 (Glycine max), 3'ss of exon 15
lower sequence: Vv18s0001g01860.t01 (Vitis vinifera), 3'ss of exon 17
----------------gtttgtgaaagcataaagtgt--tggtaacttggtatcttcagaagcatatgctctgtcttttcctttcatacgactaagattgtgtttcattttttaagttttgccag----tctcactgagcccctcctcctcatttaattcagTATGCAGCAAAAGAAGCTGAAATTGTTGCTCAAGCAGGACGGAAACATGCCATTACCCTCTCTACAAATATGGCAGGCAGGGGCACAGATATAATCCTTG
                 ||| | | | | || ||| |  |  | | || ||   ||    |    | |       |   ||| | || | ||| | | | | |||   | |||  |      ||     |||         | | ||  ||  ||  |||||||||| ||||  || ||||||||||||||||||||||| ||||||  ||| || ||| | |||||||||||||| ||||| ||||| || |||||||| |
gtttactaagatatgaatttttaagaccttatagtatgatacttagtttgtcattttgacatttgaggggggcaatgcccctgtgatgctacttatagtatctttatgtgtttgtgcacacacatatattcttttcaccatcttgcttttctgttgtttcagTATGCTGCAAGGGAGGCTGAAATTGTTGCTCAAGCAGGGCGGAAATTTGCTATCACCATTTCTACAAATATGGCTGGCAGAGGCACTGACATAATCCTAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcattttttaagttttgccagtctcactgagcccctcctcctcatttaattcagTATGCAGCAAAAGAAGCTGAAATTGTTGCTCAAGCAGGACGGAAACATGCCATTACCCTCTCTACAAATATGGCAGGCAGGGGCACAGATATAATCCTTG
                                cccctcctcctcattt  CT-rich tract
     tttttaagtttt  TA-rich tract