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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacagttctcattggatgattcactttagattcaagagtggttgtgcgatctgtagcttaaattgtgaaatagtggttgatttctttgtccctatgcagCCAATATTATACAAGGTTCAAGTCCTATTGTTGTGAAGCATACAACATTCTTCGCAAATCCAGTAACCTAATTTTAAATCTATTTTACTTAATGGCGGGT

Basic information

species Glycine max
transcript GLYMA06G10090.1
intron # 15
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G10090.1 (Glycine max), 3'ss of exon 15
lower sequence: GRMZM2G103721_T01 (Zea mays), 3'ss of exon 15
gtacagttctcattggatgattcactttagattcaagagtggttgtgcgatctgtagcttaa-attgtgaaatagtggttgatttctttgtccctatgcagCCAATATTATACAAGGTTCAAGTCCTATTGTTGTGAAGCATACAACATTCTTCGCAAATCCAGTAACCTAATTTTAAATCTATTTTACTTAATGGCGGGT
    ||||    ||| |  |||      ||  |     |   || ||   || | || |  | | | | ||| | | | |      |||||   |   |||||||||||| ||||||||||||||||| || || |||||||||||||||||  | || ||||| |  || ||||| ||||||||  |  | |||| | | 
--gtagtta--gttgaacaattttgccaagtcttt---gcttttatgtt-tcagcagatggatactctcaaaaacttgct------tttgtgttt---cagCCAATATTACACAAGGTTCAAGTCCTACTGCTGCGAAGCATACAACATTCTGAGGAAGTCCAGCAGTCTCATTTTGAATCTATTCAAGCTGATGGAGCGA

upper sequence: GLYMA06G10090.1 (Glycine max), 3'ss of exon 15
lower sequence: AT1G60490.1 (Arabidopsis thaliana), 3'ss of exon 15
gtacagttctcattggatgattcactttagattcaagagtggttgtgcgatctgtagctta---aattgtgaaatagtggttgatttctttgtccctatgcagCCAATATTATACAAGGTTCAAGTCCTATTGTTGTGAAGCATACAACATTCTTCGCAAATCCAGTAACCTAATTTTAAATCTATTTTACTTAATGGCGGGT
       |  | |   |||||  | ||   ||  |    | | | || ||  || ||| ||    | |   ||||  ||| |  ||| | |       ||||||||||| || ||||||||||| ||||| ||||| ||||| ||||||||||| || ||||| || ||||| ||||| ||||| ||| |  | |||||||||
------gtaccttaaaatgatataattcc-atgaatattttgctctgagagttgcagcatataagacttgaaaatgttggctactttgtattctgtgttgcagCCAATACTACACAAGGTTCAAATCCTACTGTTGCGAAGCCTACAACATTCTCCGGAAATCGAGCAACCTTATTTTGAATCTGTTTCATCTCATGGCGGGT

upper sequence: GLYMA06G10090.1 (Glycine max), 3'ss of exon 15
lower sequence: Vv01s0127g00430.t01 (Vitis vinifera), 3'ss of exon 15
---------------------------------------------------------------------------------------gtacagttctcattggatgattcactttagattcaagagtggttgtgcgatctgtagcttaaattgtgaaatagtggttgatttctttgtccctatgcagCCAATATTATACAAGGTTCAAGTCCTATTGTTGTGAAGCATACAACATTCTTCGCAAATCCAGTAACCTAATTTTAAATCTATTTTACTTAATGGCGGGT
                                                                                       ||  |  |  || || ||||||      |  ||     ||||   |||||| | || | |      || ||   ||||| ||| |  | | | | ||||||| ||| ||||| |||||||| ||||||||||||||||||||||| || || |||||||| |||||||| ||||| ||||| ||  |  | |||||||||
gtatcattactatgggagaaaataaccttttttgagcctttggtcttttgttttatgtcacctttgctggatgagattccatgagatgttaacataccactgcatgattttgggaaccttattttgtggcaatgcgatat-taccatgccaaatgcaa--atggttcattacacttttcttctgcagCCCATACTATACCAGGTTCAAATCCTATTGTTGTGAAGCATACAATATCCTCCGCAAATCTAGTAACCTCATTTTGAATCTGTTCCATCTGATGGCGGGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcgatctgtagcttaaattgtgaaatagtggttgatttctttgtccctatgcagCCAATATTATACAAGGTTCAAGTCCTATTGTTGTGAAGCATACAACATTCTTCGCAAATCCAGTAACCTAATTTTAAATCTATTTTACTTAATGGCGGGT
                              ggttgat  putative branch site (score: 5)
                                    tttctttgtccctat  CT-rich tract
             ttaaattgtgaaata  TA-rich tract