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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgtcgttaatatgaagcatcaactttgttggtttttgagtaacttcatgagtcaaaccttgatgttgcagAAATGTCGCCAACAACAACCTTGAGGGTCCAGTTCCTGATAATCTTAGCTTGTGTAAAAACCTCAACAGCCT

Basic information

species Glycine max
transcript GLYMA06G05900.1
intron # 15
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G05900.3 (Glycine max), 3'ss of exon 14
lower sequence: Vv04s0008g01970.t01 (Vitis vinifera), 3'ss of exon 14
gtaagtgtcgttaatatga-agcatcaactttgttggtttttgagtaacttcatg----agtcaaaccttga--tgttgcagAAATGTCGCCAACAACAACCTTGAGGGTCCAGTTCCTGATAATCTTAGCTTGTGTAAAAACCTCAACAGCCT
||| || ||   | |   | ||  | |   |      ||| ||  ||  || ||       || ||     |  |||||||||||||| || |||||| | ||||| || ||  | |||||||||||||| |  |||| |||||||||||||||
gtaggtttcaaaattgaaatagttttagtctgagaaatttctgcttatttttatatcaagttccaaatacaacttgttgcagAAATGTTGCTAACAACCATCTTGAAGGGCCTATACCTGATAATCTTAGTTCATGTACAAACCTCAACAGCCT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207823198|gb|GD794923.1|GD794923
EST:     AGTGGACATATCCCACCTGAGCTTGGAAAGCTTACTGATTTGTTTGACTT                         AAATGTCGCCAACAACAACCTTGAGGGTCCAGTTCCTGATAATCTTAGCTC
genomic: AGTGGACATATCCCACCTGAGCTTGGAAAGCTTACTGATTTGTTTGACTTgtaagtgtcg ... gatgttgcagAAATGTCGCCAACAACAACCTTGAGGGTCCAGTTCCTGATAATCTTAGCTT
EST: gi|193532525|gb|FK489727.1|FK489727
EST:     TGATTTGTTTGACTT                         AAATGTCGCCAACAACTACCTTGAGGGTCCAGTTCCTGATAATCTTAGCTT
genomic: TGATTTGTTTGACTTgtaagtgtcg ... gatgttgcagAAATGTCGCCAACAACAACCTTGAGGGTCCAGTTCCTGATAATCTTAGCTT
EST: gi|193325139|gb|FK290619.1|FK290619
EST:     AGTGGACATATCCCACCTGAGCTTGGAAAGCTTACTGATTTGCTTGACTT                         AAATGTCGCCAACAACAACCTTGAGGGTCCAGTTCCTGATAATCTTAGCTT
genomic: AGTGGACATATCCCACCTGAGCTTGGAAAGCTTACTGATTTGTTTGACTTgtaagtgtcg ... gatgttgcagAAATGTCGCCAACAACAACCTTGAGGGTCCAGTTCCTGATAATCTTAGCTT
EST: gi|207746621|gb|GD721608.1|GD721608
EST:     AGTGGACATATCCCACCTGAGCTTGGAAAGCTTACTGATTTGTTTGACTT                         AAATGTCGCCAACAACAACCTTGAGGGTCCAGTTCCTGATAATCTTAGCTC
genomic: AGTGGACATATCCCACCTGAGCTTGGAAAGCTTACTGATTTGTTTGACTTgtaagtgtcg ... gatgttgcagAAATGTCGCCAACAACAACCTTGAGGGTCCAGTTCCTGATAATCTTAGCTT
EST: gi|192296635|gb|FG991203.1|FG991203
EST:     TTGGAAAGCTTACTGATTTGTTTGACTT                         AAATGTCGCCAACAACAACCTTGAGGGTCCAGTTCCTGATAATCTTAGCTT
genomic: TTGGAAAGCTTACTGATTTGTTTGACTTgtaagtgtcg ... gatgttgcagAAATGTCGCCAACAACAACCTTGAGGGTCCAGTTCCTGATAATCTTAGCTT
EST: gi|193451692|gb|FK419848.1|FK419848
EST:     AGTGGACATATCCCACCTGAGCTTGGAAAGCTTACTGATTTGTTTGACTT                         AAATGTCGCCAACAACAACCTTGAGGGTCCAGTTCTTGATAATCTTAGCTT
genomic: AGTGGACATATCCCACCTGAGCTTGGAAAGCTTACTGATTTGTTTGACTTgtaagtgtcg ... gatgttgcagAAATGTCGCCAACAACAACCTTGAGGGTCCAGTTCCTGATAATCTTAGCTT
EST: gi|193652004|gb|FK597274.1|FK597274
EST:     AGTGGACATATCCCACCTGAGCTTGGAAAGCTTACTGATTTGTTTGACTT                         AAATGTCGCCAACAACAACCTTGAGGGTCCAGTT
genomic: AGTGGACATATCCCACCTGAGCTTGGAAAGCTTACTGATTTGTTTGACTTgtaagtgtcg ... gatgttgcagAAATGTCGCCAACAACAACCTTGAGGGTCCAGTT
EST: gi|208278224|gb|GE075721.1|GE075721
EST:     AGTGGACATATCCCACCTGAGCTTGGAAAGCTTACTGATTTGCTTGACTT                         AAATGTCGCCAACAACAACCTTGAGGGTCCAGTTCCTGATAATCTTAGCTC
genomic: AGTGGACATATCCCACCTGAGCTTGGAAAGCTTACTGATTTGTTTGACTTgtaagtgtcg ... gatgttgcagAAATGTCGCCAACAACAACCTTGAGGGTCCAGTTCCTGATAATCTTAGCTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcatcaactttgttggtttttgagtaacttcatgagtcaaaccttgatgttgcagAAATGTCGCCAACAACAACCTTGAGGGTCCAGTTCCTGATAATCTTAGCTTGTGTAAAAACCTCAACAGCCT
                tttttga  TA-rich tract