1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
...ataacataataacatactcaaatttcaaaattctctcccccttcattttctctccgttcaaacaaatggaaggttagcttaccaagtttctatttgacagGTTGTCGATGCGCTAGACCTAGCACAGGCAACAATGGGAAAAGTGTACCAAAATTTGTGTTGGGCGGTCGCATATAATGTTGTTGCCATTCCCATTGCTG
species | Glycine max |
transcript | GLYMA06G05890.1 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: CTGCCTCGGATGCAGCATCTATCATACTTCTGGGGAACAAAATTTCACAA GTTGTCGATGCGCTAGACCTAGCACAGGCAACAATGGGAAAAGTGTACCAAEST: gi|31471926|gb|CD413954.1|CD413954
genomic: CTGCCTCGGATGCAGCATCTATCATACTTCTGGGGAACAAAATTTCACAAgtatgtcttt ... tatttgacagGTTGTCGATGCGCTAGACCTAGCACAGGCAACAATGGGAAAAGTGTACCAA
EST: CATACTTCTGGGGAACAAAATTTCACAA GTTGTCTGATGCGCTAGACCTAGCACAGGCAACAATGGGAAAAGTGTACCAEST: gi|31466394|gb|CD408422.1|CD408422
genomic: CATACTTCTGGGGAACAAAATTTCACAAgtatgtcttt ... tatttgacagGTTGTC-GATGCGCTAGACCTAGCACAGGCAACAATGGGAAAAGTGTACCA
EST: GCAGCATCTATCATACTTCTGGGGAACAAAATTTCACAA GTTGTCGATGCGCTAGACCTAGCACAGGCAACAATGGGAAAAGTGTACCAAEST: gi|26269242|gb|CA820305.1|CA820305
genomic: GCAGCATCTATCATACTTCTGGGGAACAAAATTTCACAAgtatgtcttt ... tatttgacagGTTGTCGATGCGCTAGACCTAGCACAGGCAACAATGGGAAAAGTGTACCAA
EST: CTGCCTCGGATGCAGCATCTATCATACTTCTGGGGAACAAAATTTCACAA GTTGTCGATGCGCTAGACCTAGCACAGGCAACAATGGGAAAAGTGTACCAAEST: gi|120531112|gb|EH259245.1|EH259245
genomic: CTGCCTCGGATGCAGCATCTATCATACTTCTGGGGAACAAAATTTCACAAgtatgtcttt ... tatttgacagGTTGTCGATGCGCTAGACCTAGCACAGGCAACAATGGGAAAAGTGTACCAA
EST: CTGCCTCGGATGCAGCATCTATCATACTTCTGGGGAACAAAATTTCACAA GTTGTCGATGCGCTAGACCTAGCACAGGCAACAATGGGAAAAGTGTACCCAEST: gi|31561316|gb|CD487154.1|CD487154
genomic: CTGCCTCGGATGCAGCATCTATCATACTTCTGGGGAACAAAATTTCACAAgtatgtcttt ... tatttgacagGTTGTCGATGCGCTAGACCTAGCACAGGCAACAATGGGAAAAGTGTACCAA
EST: CTGCCTCGGATGCAGCATCTATCATACTTCTGGGGAACAAAATTTCACAA GTTGTCGATGCGCTAGACCTAGCACAGGCAACAATGGGAAAAGTGTACCAAEST: gi|120533209|gb|EH261342.1|EH261342
genomic: CTGCCTCGGATGCAGCATCTATCATACTTCTGGGGAACAAAATTTCACAAgtatgtcttt ... tatttgacagGTTGTCGATGCGCTAGACCTAGCACAGGCAACAATGGGAAAAGTGTACCAA
EST: CTGCCTCGGATGCAGCATCTATCATACTTCTGGGGAACAAAATTTCACAA GTTGTCGATGCGCTAGACCTAGCACAGGCAACAATGGGAAAAGTGTACCAAEST: gi|17400756|gb|BM177538.1|BM177538
genomic: CTGCCTCGGATGCAGCATCTATCATACTTCTGGGGAACAAAATTTCACAAgtatgtcttt ... tatttgacagGTTGTCGATGCGCTAGACCTAGCACAGGCAACAATGGGAAAAGTGTACCAA
EST: CTGCCTCGGATGCAGCATCTATCATACTTCTGGGGAACAAAATTTCACAA GTTGTCGATGCGCTAGACCTAGCACAGGCAACAATGGGAAAAGTGTACCAAEST: gi|120533361|gb|EH261494.1|EH261494
genomic: CTGCCTCGGATGCAGCATCTATCATACTTCTGGGGAACAAAATTTCACAAgtatgtcttt ... tatttgacagGTTGTCGATGCGCTAGACCTAGCACAGGCAACAATGGGAAAAGTGTACCAA
EST: CTGCCTCGGATGCAGCATCTATCATACTTCTGGGGAACAAAATTTCACAA GTTGTCGATGCGCTAGACCTAGCACAGGCAACAATGGGAAAAGTGTACCAA
genomic: CTGCCTCGGATGCAGCATCTATCATACTTCTGGGGAACAAAATTTCACAAgtatgtcttt ... tatttgacagGTTGTCGATGCGCTAGACCTAGCACAGGCAACAATGGGAAAAGTGTACCAA
ttttctctccgttcaaacaaatggaaggttagcttaccaagtttctatttgacagGTTGTCGATGCGCTAGACCTAGCACAGGCAACAATGGGAAAAGTGTACCAAAATTTGTGTTGGGCGGTCGCATATAATGTTGTTGCCATTCCCATTGCTG
agcttac putative branch site (score: 3)
tttctattt putative PPT
tttctattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ataacataataacatactcaaatttcaaaattctctcccccttcattttctctccgttcaaacaaatggaaggttagcttaccaagtttctatttgacagGTTGTCGATGCGCTAGACCTAGCACAGGCAACAATGGGAAAAGTGTACCAAAATTTGTGTTGGGCGGTCGCATATAATGTTGTTGCCATTCCCATTGCTG
- - - - - - catactc
- - - - - - - - - - - - - - - - ctctccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggaagg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcttacc