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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatgaatattatagatgcttcaaattttcttaaaataatccaactccaaggtctttgtaattatttttccctattacagGTTATTGTGACTGTGGATGCTTCAGATGCTGATGAATTCTCAGAGGTGTTCTCCAAGCCTCTCAGGTCTCTTCCTTATGATTCACCTGGACAGACTTTTG

Basic information

species Glycine max
transcript GLYMA06G01520.1
intron # 15
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA06G01520.1 (Glycine max), 3'ss of exon 15
lower sequence: Vv03s0063g02450.t01 (Vitis vinifera), 3'ss of exon 15
gtaatgaatattatagatgcttcaaattttct-taaaataatccaactccaaggtct--ttgtaattatttt-tccctatta-cagGTTATTGTGACTGTGGATGCTTCAGATGCTGATGAATTCTCAGAGGTGTTCTCCAAGCCTCTCAGGTCTCTTCCTTATGATTCACCTGGACAGACTTTTG
|||||||  | | ||||        | ||  | |    | | |  ||||     |    |||||| | || | | | | ||  ||||| | ||| |  ||||||||||||||||| || |||||||| || || |   ||||||| || || |||||||||||||||||||| ||||| || ||||
gtaatgaccaatttagaacagctgcacttcatgttttctgaccttactcgggacttccattgtaacttttctatacttgttggcagGTCACTGTTATCGTGGATGCTTCAGATGCAGAGGAATTCTCCGAAGTATCAACCAAGCCCCTAAGATCTCTTCCTTATGATTCACCAGGACAAACATTTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26268306|gb|CA819369.1|CA819369
EST:     TGTTCCAGTACAACTGCACAAACACGATACCAGAGCAATTGTTGGAACAT                         GTTATTGTGACTGTGGATGCTTCAGATGCTGATGAATTCTCAGAGGTGTTC
genomic: TGTTCCAGTACAACTGCACAAACACGATACCAGAGCAATTGTTGGAACATgtaatgaata ... cctattacagGTTATTGTGACTGTGGATGCTTCAGATGCTGATGAATTCTCAGAGGTGTTC
EST: gi|192308894|gb|FK002118.1|FK002118
EST:     TGTTCCAGTACAACTGCACAAACACGATACCAGAGCAATTGTTGGAACAT                         GTTATTGTGACTGTGGATGCTTCAGATGCTGATGAATTCTCAGAGGTGTTC
genomic: TGTTCCAGTACAACTGCACAAACACGATACCAGAGCAATTGTTGGAACATgtaatgaata ... cctattacagGTTATTGTGACTGTGGATGCTTCAGATGCTGATGAATTCTCAGAGGTGTTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttcttaaaataatccaactccaaggtctttgtaattatttttccctattacagGTTATTGTGACTGTGGATGCTTCAGATGCTGATGAATTCTCAGAGGTGTTCTCCAAGCCTCTCAGGTCTCTTCCTTATGATTCACCTGGACAGACTTTTG
                                    ttatttttccctatt  CT-rich tract
                           tctttgtaattatttt  TA-rich tract