Sequence
atgc intronic sequence ATGC exonic sequencegtccataaccaacttgtgaatttcagggatactcaccaactttggaacgttacaatcaaatttaactttgcatttctgtgatctttcagATTATGGAAACAAACAGAAGTGAGGAATCTCAGAGTCATGTGCACAGGTTGTATTTCCATGGCCCAAATACATTCAGTGAACCTTGGCATCTACTTCATT
Basic information
species | Glycine max |
transcript | GLYMA05G36070.2 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA05G36070.2 (Glycine max), 3'ss of exon 15
lower sequence: LOC_Os05g09360.1 (Oryza sativa), 3'ss of exon 12
gtccataaccaacttgtgaatttcagggatactcaccaactttggaacgttacaatcaaatttaactttgcatttctg-tgatctttcagATTATGGAAACAAACAGAAGTGAGGAATCTCAGAGTCATGTGCACAGGTTGTATTTCCATGGCCCAAATACATTCAGTGAACCTTGGCATCTACTTCATT
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gtagcagaacattctgcattcctaatttgtttctttaagctgtggtgtgattgttctggtttttcgttgaaatctctcctcatgtggtagGTACTGGAAACCAATAGGGCCGAAGAATCTCACTGTCATGTGCACAGGATGTATTTCATGGGTCCCAACACCTTCAGTGAACCTTGGCATCTACCACACA
upper sequence: GLYMA05G36070.2 (Glycine max), 3'ss of exon 15
lower sequence: GRMZM2G350818_T02 (Zea mays), 3'ss of exon 7
gtccataaccaacttgtgaatttcagggatactcaccaactttggaacgttacaatcaaatttaactttgcatttctgtgatc-tttcagATTATGGAAACAAACAGAAGTGAGGAATCTCAGAGTCATGTGCACAGGTTGTATTTCCATGGCCCAAATACATTCAGTGAACCTTGGCATCTACTTCATT
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-gtgaaatccattctgttg-tgctgattcccttaataagccgtggtgtggtcatttctaatgttactgaa-atttctgctattgtggcagGTATTGGAAACAAACAGGGCAGAAGAATCTCACTGTCATGTGCACAGGATGTATTTCATGGGCCCAAACACCTTCAGTGAACCTTGGCATCTCCCACACAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|193485165|gb|FK449043.1|FK449043EST: ATGACACTCGACTGAACCACTCTTTTCCTTTTCTTGAACCACTGAATGAG ATTATGGAAACAAACAGAAGTGAGGAATCTCAGAGTCATGTGCACAGGTTG
genomic: ATGACACTCGACTGAACCACTCTTTTCCTTTTCTTGAATCACTGAATGAGgtccataacc ... gatctttcagATTATGGAAACAAACAGAAGTGAGGAATCTCAGAGTCATGTGCACAGGTTG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.accaactttggaacgttacaatcaaatttaactttgcatttctgtgatctttcagATTATGGAAACAAACAGAAGTGAGGAATCTCAGAGTCATGTGCACAGGTTGTATTTCCATGGCCCAAATACATTCAGTGAACCTTGGCATCTACTTCATT
tctttc CT-rich tract
ttacaatcaaatttaa TA-rich tract