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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatctttattcatcatttgttatgtcacatgccttgaatcttttctatgtagattttcttatgatctttgactcttgtctttgattttattgcacagGTGACCAAGCGAAGACACTCATGTTTGTTCAAATTAATTCAGACGTAAGTTCATATTCTGAAACACTGAGCACTTTAAAGTTTGCTGAAAGGGTTTCTGG

Basic information

species Glycine max
transcript GLYMA05G35130.1
intron # 15
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G35130.1 (Glycine max), 3'ss of exon 15
lower sequence: LOC_Os05g44560.1 (Oryza sativa), 3'ss of exon 17
gtaaatctttattcatcatttgttatgtcacatgccttgaatcttttctatgtagattttcttatgatctttgactcttgtctttgattttattgcacagGTGACCAAGCGAAGACACTCATGTTTGTTCAAATTAATTCAGACGTAAGTTCATATTCTGAAACACTGAGCACTTTAAAGTTTGCTGAAAGGGTTTCTGG
||||    ||||| |    |||  |  |||      | || |    | ||||  | |||| | |  ||     | |||| |     | | | |||||  ||||  ||||| |||||||| |||||||||||||| ||| | || ||    |||||||| || ||  | |||||| |||||||||||||||||||||||||
gtaatcaattatttag---ttgaaaaatcatgcatgtggagttagatttatg--gtttttgtaactat-----aatcttataaaataatctcttgca--gGTGGACAAGCAAAGACACTAATGTTTGTTCAAATAAATCCTGATGTTGAGTCATATTCAGAGACTATAAGCACTCTAAAGTTTGCTGAAAGGGTTTCTGG

upper sequence: GLYMA05G35130.1 (Glycine max), 3'ss of exon 15
lower sequence: LOC_Os01g54080.1 (Oryza sativa), 3'ss of exon 17
gtaaatctttattcatcatttgttatgtcacatgccttgaatcttttctatgtagattttcttatgatctttgactcttgtctttgattttattgcacagGTGACCAAGCGAAGACACTCATGTTTGTTCAAATTAATTCAGACGTAAGTTCATATTCTGAAACACTGAGCACTTTAAAGTTTGCTGAAAGGGTTTCTGG
                     || |  | | |    ||||    | | || || |||   ||||  |  ||     | |  |||      | |     |||||  ||||| |||||||| |||||||||||||| ||  | ||  |    |||||||| |||||  | || |||||||| ||||||||||||||||||||
---------------------gtaacat-atagttgttgatagatgtgtacgtggataggcttactagtttg----cctaacttatgcgctttcttgtagGTGGACAAGCAAAGACACTAATGTTTGTTCAAATAAACCCTGATATTGAATCATATTCAGAAACCATAAGTACTTTAAAATTTGCTGAAAGGGTTTCTGG

upper sequence: GLYMA05G35130.1 (Glycine max), 3'ss of exon 15
lower sequence: GRMZM2G124883_T01 (Zea mays), 3'ss of exon 8
------gtaaatctttattcatcatttgttatgtcacatgccttgaatcttttctatgtagattttcttatgatctttgactcttgtctttgattttattgcacagGTGACCAAGCGAAGACACTCATGTTTGTTCAAATTAATTCAGACGTAAGTTCATATTCTGAAACACTGAGCACTTTAAAGTTTGCTGAAAGGGTTTCTGG
       |||    |  ||  || |  |  |         ||    |  |  | ||| ||      | ||| || | |||   || || |   ||||  ||||  ||||  ||||| |||||||| |||||||||||||||||| | ||     | |||||||| |||||| | |||||||| |||||||||||||||||||||||
gtaacaataacatatagttgttcctcggaaaaaaggggcaccaaatagttggtttatatatgcggacatattatttatgataattctcgtctgttttcatgca--gGTGGGCAAGCAAAGACACTGATGTTTGTTCAAATTAATCCGGATACTGGATCATATTCAGAAACAATAAGCACTTTGAAGTTTGCTGAAAGGGTTTCTGG

upper sequence: GLYMA05G35130.1 (Glycine max), 3'ss of exon 15
lower sequence: GRMZM2G323622_T01 (Zea mays), 3'ss of exon 8
---gtaaatctttattcatcatt--tgttatgtcacatgccttgaatcttttctatgtagat---tttcttatgatctttgactcttgtctttgattttattgcacagGTGACCAAGCGAAGACACTCATGTTTGTTCAAATTAATTCAGACGTAAGTTCATATTCTGAAACACTGAGCACTTTAAAGTTTGCTGAAAGGGTTTCTGG
     | ||  || ||| |||     |  | |||| ||   | |    || | |||| |||    || |||||||  | |||   || ||||   |||| |||||  || |  ||||| |||||| | |||||||||||||||||| | ||       |||||||| |||||| | |||||||| |||||||||||||||||||||||
gtaacatatagttgttcctcaaaaaagggacgtcaaatagttag---tttatatatgcagacatattacttatgagttatgataattctcttctgttttcttgca--gGCGGACAAGCAAAGACATTGATGTTTGTTCAAATTAATCCGGATACTGAATCATATTCAGAAACAATAAGCACTTTGAAGTTTGCTGAAAGGGTTTCTGG

upper sequence: GLYMA05G35130.1 (Glycine max), 3'ss of exon 15
lower sequence: GRMZM5G845682_T02 (Zea mays), 3'ss of exon 4
gtaaatctttattcatcatttgttatgtcacatgccttgaatcttttctatgtagattttcttatgatctttgactcttgtctttgattttattgcacagGTGACCAAGCGAAGACACTCATGTTTGTTCAAATTAATTCAGACGTAAGTTCATATTCTGAAACACTGAGCACTTTAAAGTTTGCTGAAAGGGTTTCTGG
||||     |||| ||    |   |    ||  |   | ||     | |||||  || || | |  || ||||  |  |  ||||   ||| || ||  ||||  ||||| || || || ||||| |||||||| ||| | || ||    |||||||| |||||  | |||||||||||||||||||||||||| |||||
gtaatcaagtatttatttactaccagtaaactagatcttaaatagatttatgtgaatattttaa--atatttg--tactaccttttgctttcttcca--gGTGGACAAGCAAAAACTCTAATGTTCGTTCAAATAAATCCTGATGTTGAGTCATATTCAGAAACTATAAGCACTTTAAAGTTTGCTGAAAGGGTGTCTGG

upper sequence: GLYMA05G35130.1 (Glycine max), 3'ss of exon 15
lower sequence: GRMZM2G173700_T01 (Zea mays), 3'ss of exon 14
----gtaaatctttattcatcatttgttatgtcacatgccttgaatcttttctatgtagattttcttatgatctttgactcttgtctttgattttattgcacagGTGACCAAGCGAAGACACTCATGTTTGTTCAAATTAATTCAGACGTAAGTTCATATTCTGAAACACTGAGCACTTTAAAGTTTGCTGAAAGGGTTTCTGG
      |||| |||||| |  |  |   |||| | ||   || |   || ||| |  | |||||   |||            |  |||| ||||| || ||  ||||  ||||| || || || ||||||||||| || ||| | || ||    |||||||| |||||  | || ||||||||||||||||||||||| |||||
gtaatcaaatatttatttactacctag-atgttaaatatattaatgtttatct-tccaaatttt---atg------------taccttttattttcttcca--gGTGGACAAGCAAAAACTCTAATGTTTGTTCAGATAAATCCTGATGTTGAGTCATATTCAGAAACTATAAGTACTTTAAAGTTTGCTGAAAGGGTGTCTGG

upper sequence: GLYMA05G35130.1 (Glycine max), 3'ss of exon 15
lower sequence: GRMZM2G093391_T01 (Zea mays), 3'ss of exon 2
gtaaatctttattcatcatttgttatgtcacatgccttgaatcttttctatgtagattttcttatgatctttgactcttgtctttgattttattgcacagGTGACCAAGCGAAGACACTCATGTTTGTTCAAATTAATTCAGACGTAAGTTCATATTCTGAAACACTGAGCACTTTAAAGTTTGCTGAAAGGGTTTCTGG
                       |   |  |||  || || | || | |||    |||| | | | |||  | | |||  | |||   || ||    |||| | ||| || || ||  | |||||||| || || ||  |||| ||    || ||||| || ||  | || ||||| |||||||||||||||||||||||
----------------------gtgcttaccattgct-gattgttctatatact-atttacatgttatcagtta-tctaatattt---ttcatc-tgcagGCGGCCATGCAAAAACCTTGATGTTTGTGCAGATCAACCCAGATGTCTCATCTTATTCGGAGACTTTAAGTACTTTGAAGTTTGCTGAAAGGGTTTCTGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttctatgtagattttcttatgatctttgactcttgtctttgattttattgcacagGTGACCAAGCGAAGACACTCATGTTTGTTCAAATTAATTCAGACGTAAGTTCATATTCTGAAACACTGAGCACTTTAAAGTTTGCTGAAAGGGTTTCTGG
                                          ttttatt  CT-rich tract
                                   tctttgattttatt  TA-rich tract