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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ggtggattttatattattagaaactaggtctcttattggggaaatttcagacctactttttactgattgatgtttattgctttttgatttggcatgaaagGGTTTGAAGACTGGGATGTATTATCTGCGATCACGTGCCGCAGCAGATGCTATCAAGTTTACTGTTGATACCTCTATGCTCCAT

Basic information

species Glycine max
transcript GLYMA05G32070.1
intron # 15
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|51345093|gb|CO985826.1|CO985826
EST:     AACCCAACTTTGGAAAGTTAACTTCTTTGCATTTCTATGCATGGTCAAAG                         GGTTTGAAGACTGGGATGTATTATCTGCGATCACGTGCCGCAGCAGATGCT
genomic: AACCCAACTTTGGAAAGTTAACTTCTTTGCATTTCTATGCATGGTCAAAGgtatcgacct ... ggcatgaaagGGTTTGAAGACTGGGATGTATTATCTGCGATCACGTGCCGCAGCAGATGCT
EST: gi|58022119|gb|CX708860.1|CX708860
EST:     AACCCAACTTTGGAAAGTTAACTTCTTTGCATTTCTATGCATGGTCAAAG                         GGTTTGAAGACTGGGATGTATTATCTGCGATCACGTGCCGCAGCAGATGCT
genomic: AACCCAACTTTGGAAAGTTAACTTCTTTGCATTTCTATGCATGGTCAAAGgtatcgacct ... ggcatgaaagGGTTTGAAGACTGGGATGTATTATCTGCGATCACGTGCCGCAGCAGATGCT
EST: gi|31307786|gb|CD392989.1|CD392989
EST:     TACCCAACTTTGGAAAGTTAACTTCTTTGCATTTCTATGCATGGTCAAAG                         GGTTTGAAGACTGGGATGTATTATCTGCGATCACGTGCCGCAGCAGATGCT
genomic: AACCCAACTTTGGAAAGTTAACTTCTTTGCATTTCTATGCATGGTCAAAGgtatcgacct ... ggcatgaaagGGTTTGAAGACTGGGATGTATTATCTGCGATCACGTGCCGCAGCAGATGCT
EST: gi|15812247|gb|BI784522.1|BI784522
EST:     AACCCAACTTTGGAAAGTTAACTTCTTTGCATTTCTATGCATGGTCAAAG                         GGTTTGAAGACTGGGATGTATTATCTGCGATCACGTGCCGCAGCAGATGCT
genomic: AACCCAACTTTGGAAAGTTAACTTCTTTGCATTTCTATGCATGGTCAAAGgtatcgacct ... ggcatgaaagGGTTTGAAGACTGGGATGTATTATCTGCGATCACGTGCCGCAGCAGATGCT
EST: gi|208201785|gb|GE000965.1|GE000965
EST:     AACCCAACTTTGGAAAGTTAACTTCTTTGCATTTCTATGCATGGTCAAAG                         GGTTTGAAGACTGGGATGTATTATCTGCGATCACGTGCCGCAGCAGATGCT
genomic: AACCCAACTTTGGAAAGTTAACTTCTTTGCATTTCTATGCATGGTCAAAGgtatcgacct ... ggcatgaaagGGTTTGAAGACTGGGATGTATTATCTGCGATCACGTGCCGCAGCAGATGCT
EST: gi|213614996|gb|DB978373.1|DB978373
EST:     TTAACTTCTTTGCATTTCTATGCATTATCAAAG                         GGTTTGAAGACTGGGATGTATTAAGGGCGATCACGTGCCGCAGCCGATGCT
genomic: TTAACTTCTTTGCATTTCTATGCATGGTCAAAGgtatcgacct ... ggcatgaaagGGTTTGAAGACTGGGATGTATTATCTGCGATCACGTGCCGCAGCAGATGCT
EST: gi|13791431|gb|BG654022.1|BG654022
EST:     AACCCAACTTTGGAAAGTTAACTTCTTTGCATTTCTATGCATGGTCAAAG                         GGTTTGAAGACTGGGATGTATTATCTGCGATCACGTGCCGCAGCAGATGCT
genomic: AACCCAACTTTGGAAAGTTAACTTCTTTGCATTTCTATGCATGGTCAAAGgtatcgacct ... ggcatgaaagGGTTTGAAGACTGGGATGTATTATCTGCGATCACGTGCCGCAGCAGATGCT
EST: gi|58018661|gb|CX705403.1|CX705403
EST:     AACCCAACTTTGGAAAGTTAACTTCTTTGCATTTCTATGCATGGTCAAAG                         GGTTTGAAGACTGGGATGTATTATCTGCGATCACGTGCCGCAGCAGATGCT
genomic: AACCCAACTTTGGAAAGTTAACTTCTTTGCATTTCTATGCATGGTCAAAGgtatcgacct ... ggcatgaaagGGTTTGAAGACTGGGATGTATTATCTGCGATCACGTGCCGCAGCAGATGCT
EST: gi|208287252|gb|GE084804.1|GE084804
EST:     TGGAAAGTTAACTTCTTTGCATTTCTATGCATGGTCAAAG                         GGTTTGAAGACTGGGATGTATTATCTGCGATCACGTGCCGCAGCAGATGCT
genomic: TGGAAAGTTAACTTCTTTGCATTTCTATGCATGGTCAAAGgtatcgacct ... ggcatgaaagGGTTTGAAGACTGGGATGTATTATCTGCGATCACGTGCCGCAGCAGATGCT
EST: gi|58024594|gb|CX711335.1|CX711335
EST:     AACCCAACTTTGGAAAGTTAACTTCTTTGCATTTCTATGCATGGTCAAAG                         GGTTTGAAGACTGGGATGTATTATCTGCGATCACGTGCCGCAGCAGATGCT
genomic: AACCCAACTTTGGAAAGTTAACTTCTTTGCATTTCTATGCATGGTCAAAGgtatcgacct ... ggcatgaaagGGTTTGAAGACTGGGATGTATTATCTGCGATCACGTGCCGCAGCAGATGCT
EST: gi|192293903|gb|FG986112.1|FG986112
EST:     AACCCAACTTTGGAAAGTTAACTTCTTTGCATTTCTATGCATGGTCAAAG                         GGTTTGAAGACTGGGATGTATTATCTGCGATCACGTGCCGCAGCAGATGCT
genomic: AACCCAACTTTGGAAAGTTAACTTCTTTGCATTTCTATGCATGGTCAAAGgtatcgacct ... ggcatgaaagGGTTTGAAGACTGGGATGTATTATCTGCGATCACGTGCCGCAGCAGATGCT
EST: gi|51335204|gb|CO979070.1|CO979070
EST:     AACCCAACTTTGGAAAGTTAACTTCTTTGCATTTCTATGCATGGTCAAAG                         GGTTTGAAGACTGGGATGTATTATCTTCGATCACGTGCCGCAGCAGATGCT
genomic: AACCCAACTTTGGAAAGTTAACTTCTTTGCATTTCTATGCATGGTCAAAGgtatcgacct ... ggcatgaaagGGTTTGAAGACTGGGATGTATTATCTGCGATCACGTGCCGCAGCAGATGCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcagacctactttttactgattgatgtttattgctttttgatttggcatgaaagGGTTTGAAGACTGGGATGTATTATCTGCGATCACGTGCCGCAGCAGATGCTATCAAGTTTACTGTTGATACCTCTATGCTCCAT
                                   tttttgattt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ggtggattttatattattagaaactaggtctcttattggggaaatttcagacctactttttactgattgatgtttattgctttttgatttggcatgaaagGGTTTGAAGACTGGGATGTATTATCTGCGATCACGTGCCGCAGCAGATGCTATCAAGTTTACTGTTGATACCTCTATGCTCCAT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGATG
- - - - - - - - - - - - - - - - - -ttgggga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgattg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgctttt