1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
...aagtaacaatggagaatacatatgaaatgatgcttgataagctttggcattcttttccatctcgctaaatattgttattatttttctcttttttccccagTATGGGTTTGGACCTTTCGCAAGGGAAAATCAGAAACAACTTGGAGGCCGGAGTCATTGAGCCTGCAATGAGCAAAGTAAAAATTATTCAG
species | Glycine max |
transcript | GLYMA05G29870.1 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: GCCTACCACCATTCAGCGCAAACTAAAGCCGATAAGAAACATTTATCAAG TATGGGTTTGGACCTTTCGCAAGGGAAAATCAGAAACAACTTGGAGGCCGGEST: gi|57575315|gb|CX548290.1|CX548290
genomic: GCCTACCACCATTCAGCGCAAACTAAAGCCGATAAGAAACATTTATCAAGgtatttgctt ... ttttccccagTATGGGTTTGGACCTTTCGCAAGGGAAAATCAGAAACAACTTGGAGGCCGG
EST: GCCTACCACCATTCAGCGCAAACTAAAGCCGATAAGAAACATTTATCAAG TATGGGTTTGGACCTTTCGCAAGGGAAAATCAGAAACAACTTGGAGGCCGGEST: gi|13482485|gb|BG511828.1|BG511828
genomic: GCCTACCACCATTCAGCGCAAACTAAAGCCGATAAGAAACATTTATCAAGgtatttgctt ... ttttccccagTATGGGTTTGGACCTTTCGCAAGGGAAAATCAGAAACAACTTGGAGGCCGG
EST: GCCTACCACCATTCAGCGCAAACTAAAGCCGATAAGAAACATTTATCAAG TNTGGGTTTGGACCTTTCGCAAGGGAAAATCAGAAACAACTTGGAGGCCGGEST: gi|23727410|gb|BU761735.1|BU761735
genomic: GCCTACCACCATTCAGCGCAAACTAAAGCCGATAAGAAACATTTATCAAGgtatttgctt ... ttttccccagTATGGGTTTGGACCTTTCGCAAGGGAAAATCAGAAACAACTTGGAGGCCGG
EST: GCCTACCACCATTCAGCGCAAACTAAAGCCGATAAGAAACATTTATCAAG TATGGGTTTGGACCTTTCGCAAGGGAAAATCAGAAACAACTTGGAGGCCGGEST: gi|57575079|gb|CX548054.1|CX548054
genomic: GCCTACCACCATTCAGCGCAAACTAAAGCCGATAAGAAACATTTATCAAGgtatttgctt ... ttttccccagTATGGGTTTGGACCTTTCGCAAGGGAAAATCAGAAACAACTTGGAGGCCGG
EST: GCCTACCACCATTCAGCGCAAACTAAAGCCGATAAGAAACATTTATCAAG TATGGGTTTGGACCTTTCGCAAGGGAAAATCAGAAACAACTTGGAGGCCGGEST: gi|22932667|gb|BU549806.1|BU549806
genomic: GCCTACCACCATTCAGCGCAAACTAAAGCCGATAAGAAACATTTATCAAGgtatttgctt ... ttttccccagTATGGGTTTGGACCTTTCGCAAGGGAAAATCAGAAACAACTTGGAGGCCGG
EST: GCCTACCACCATTCAGCGCAAACTAAAGCCGATAAGAAACATTTATCAAG TATGGGTTTGGACCTTTCGCAAGGGAAAATCAGAAACAACTTGGAGGCCGGEST: gi|7589348|gb|AW705124.1|AW705124
genomic: GCCTACCACCATTCAGCGCAAACTAAAGCCGATAAGAAACATTTATCAAGgtatttgctt ... ttttccccagTATGGGTTTGGACCTTTCGCAAGGGAAAATCAGAAACAACTTGGAGGCCGG
EST: GCCTACCACCATTCAGCGCANACTAAAGCCGATAAGAAACATTTATCAAG TATGGGTTTGGACCTTTCGCAAGGGAAAATCAGAAACAACTTGGAGGCCGGEST: gi|58018371|gb|CX705113.1|CX705113
genomic: GCCTACCACCATTCAGCGCAAACTAAAGCCGATAAGAAACATTTATCAAGgtatttgctt ... ttttccccagTATGGGTTTGGACCTTTCGCAAGGGAAAATCAGAAACAACTTGGAGGCCGG
EST: GCCTACCACCATTCAGCGCAAACTAAAGCCGATAAGAAACATTTATCAAG TATGGGTTTGGACCTTTCGCAAGGGAAAATCAGAAACAACTTGGAGGCCGGEST: gi|20448998|gb|BQ253122.1|BQ253122
genomic: GCCTACCACCATTCAGCGCAAACTAAAGCCGATAAGAAACATTTATCAAGgtatttgctt ... ttttccccagTATGGGTTTGGACCTTTCGCAAGGGAAAATCAGAAACAACTTGGAGGCCGG
EST: GCCTACCACCATTCAGCGCAAACTAAAGCCGATAAGAAACATTTATCAAG TATGGGTTTGGACCTTTCGCAAGGGAAAATCAGAAACAACTTEST: gi|58016681|gb|CX703423.1|CX703423
genomic: GCCTACCACCATTCAGCGCAAACTAAAGCCGATAAGAAACATTTATCAAGgtatttgctt ... ttttccccagTATGGGTTTGGACCTTTCGCAAGGGAAAATCAGAAACAACTT
EST: GCCTACCACCATTCAGCGCAAACTAAAGCCGATAAGAAACATTTATCAAG TATGGGTTTGGACCTTTCGCAAGGGAAAATCAGAAACAACTTGGAGGCCGGEST: gi|298170514|gb|HO019138.1|HO019138
genomic: GCCTACCACCATTCAGCGCAAACTAAAGCCGATAAGAAACATTTATCAAGgtatttgctt ... ttttccccagTATGGGTTTGGACCTTTCGCAAGGGAAAATCAGAAACAACTTGGAGGCCGG
EST: GCCTACCACCATTCAGCGCAAACTAAAGCCGATAAGAAACATTTATCAAG TATGGGTTTGGACCTTTCGCAAGGGAAAATCAGAAACAACTTGGAGGCCGGEST: gi|58016928|gb|CX703670.1|CX703670
genomic: GCCTACCACCATTCAGCGCAAACTAAAGCCGATAAGAAACATTTATCAAGgtatttgctt ... ttttccccagTATGGGTTTGGACCTTTCGCAAGGGAAAATCAGAAACAACTTGGAGGCCGG
EST: GCCTACCACCATTCAGCGCAAACTAAAGCCGATAAGAAACATTTATCAAG TATGGGTTTGGACCTTTCGCAAGGGAAAATCAGAAACAACTTGGAGGCCGGEST: gi|254334340|gb|GR844125.1|GR844125
genomic: GCCTACCACCATTCAGCGCAAACTAAAGCCGATAAGAAACATTTATCAAGgtatttgctt ... ttttccccagTATGGGTTTGGACCTTTCGCAAGGGAAAATCAGAAACAACTTGGAGGCCGG
EST: GCCTACCACCATTCAGCGCAAACTAAAGCCGATAAGAAACATTTATCAAG TATGGGTTTGGACCTTTCGCAAGGGAAAATCAGAAACAACTTGGAGGCCGG
genomic: GCCTACCACCATTCAGCGCAAACTAAAGCCGATAAGAAACATTTATCAAGgtatttgctt ... ttttccccagTATGGGTTTGGACCTTTCGCAAGGGAAAATCAGAAACAACTTGGAGGCCGG
ggcattcttttccatctcgctaaatattgttattatttttctcttttttccccagTATGGGTTTGGACCTTTCGCAAGGGAAAATCAGAAACAACTTGGAGGCCGGAGTCATTGAGCCTGCAATGAGCAAAGTAAAAATTATTCAG
cgctaaa putative branch site (score: 3)
tattgttattattttt CT-rich tract
taaatattgttattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aagtaacaatggagaatacatatgaaatgatgcttgataagctttggcattcttttccatctcgctaaatattgttattatttttctcttttttccccagTATGGGTTTGGACCTTTCGCAAGGGAAAATCAGAAACAACTTGGAGGCCGGAGTCATTGAGCCTGCAATGAGCAAAGTAAAAATTATTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - caatgga
- - - - - - - - - - - - - -tgatgct
- - - - - - - - - - - - - - - - - - - - gctttgg