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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattctaagatataggaaatgaaaagggtgtaccttacacctagttagtcgacaaaataagaaagttttttattgcagaaaaggtcatgaaattacaaatagaacttttgctttttcatttgttaaaattcatttacttaccatgtttatgcagGATACAAGTCGTGAAAATAAGTTGCGCTTGTTAATGATTCTTGCGTCCATATATCCTGAGAAATTTGAGGGTGAAAAGGGTCTGAATTTAATGAAG

Basic information

species Glycine max
transcript GLYMA05G03970.1
intron # 15
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA05G03970.1 (Glycine max), 3'ss of exon 15
lower sequence: Vv13s0019g05000.t01 (Vitis vinifera), 3'ss of exon 14
gtaattctaagatataggaaatgaaaagggtgtaccttacacctagttagtcgacaaaataagaaagttttttattgcagaaaaggtcatgaaattacaaatagaacttttgctttttcatttgttaaaattcatttacttaccatgtttatgcagGATACAAGTCGTGAAAATAAGTTGCGCTTGTTAATGATTCTTGCGTCCATATATCCTGAGAAATTTGAGGGTGAAAAGGGTCTGAATTTAATGAAG
                                                              || |    | || || | |||||    || |  | ||  |   || ||| |  | |   || ||||     ||  |  |||| |    ||||||||| | |  |||||||||||| |||| || || ||||||  |||  |||| ||||||||||| ||||||||||| || | |   || || ||||||
------------------------------------------------------------gtgagaaccatatagtgaataaaag----tgga--tgcaccttacacatttccactctgtcttattaa-----ataaaaatacctttgaaatgcagGATGCCACCCGTGAAAATAAGCTGCGTTTATTGATGATTTATGCAGCCATTTATCCTGAGAAGTTTGAGGGTGACAAAGCTTCCAAGTTGATGAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23729024|gb|BU762588.1|BU762588
EST:     TTGGAGATGCAGGGATGAAAGATGTGATCAAATTTTTGACTACATACGAA                         GATACAAGTCGTGAAAATAAGTTGCGCTTGTTAATGATTCTTGCGTCCATA
genomic: TTGGAGATGCAGGGATGAAAGATGTGATCAAATTTTTGACTACATACGAAgtaattctaa ... gtttatgcagGATACAAGTCGTGAAAATAAGTTGCGCTTGTTAATGATTCTTGCGTCCATA
EST: gi|151410738|gb|EV280553.1|EV280553
EST:     TTGGAGATGCAGGGATGAAAGATGTGATCAAATTTTTGACTACATACGAA                         AATACAAGTCGTGAAAATAAGTTGCGCTTGTTAATGATTCTTGCGTCCATA
genomic: TTGGAGATGCAGGGATGAAAGATGTGATCAAATTTTTGACTACATACGAAgtaattctaa ... gtttatgcagGATACAAGTCGTGAAAATAAGTTGCGCTTGTTAATGATTCTTGCGTCCATA
EST: gi|19347362|gb|BM892242.1|BM892242
EST:     TTGGAGATGCAGGGATGAAAGATGTGATCAAATTTTTGACTACATACGAA                         GATACAAGTCGTGAAAATAAGTTGCGCTTGTTAATGATTCTTGCGTCCATA
genomic: TTGGAGATGCAGGGATGAAAGATGTGATCAAATTTTTGACTACATACGAAgtaattctaa ... gtttatgcagGATACAAGTCGTGAAAATAAGTTGCGCTTGTTAATGATTCTTGCGTCCATA
EST: gi|10844672|gb|BF067898.1|BF067898
EST:     TTGGAGATGCAGGGATGAAAGATGTGATCAAATTTTTGACTACATACGAA                         GATACAAGTCGTGAAAATAAGTTGCGCTTGTTAATGATT
genomic: TTGGAGATGCAGGGATGAAAGATGTGATCAAATTTTTGACTACATACGAAgtaattctaa ... gtttatgcagGATACAAGTCGTGAAAATAAGTTGCGCTTGTTAATGATT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagaacttttgctttttcatttgttaaaattcatttacttaccatgtttatgcagGATACAAGTCGTGAAAATAAGTTGCGCTTGTTAATGATTCTTGCGTCCATATATCCTGAGAAATTTGAGGGTGAAAAGGGTCTGAATTTAATGAAG
                                   tacttac  putative branch site (score: 1)
            tttttcatttgttaaa  TA-rich tract