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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaactcaatatttttttgagtttgttttacttgtacatgagtaagaaatgatgtttcgatttgttgaaaacaataattctattacagGTTTGGTCCCGCTGGCGACGCTAGAGGTGCAGGAATTGGAACACCGGAGGCTATAAAACTTGTATGGTCTTGCCACAGAGAAGTTATATATGATTTTGGA

Basic information

species Glycine max
transcript GLYMA05G01300.2
intron # 15
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14259159|gb|BG882067.1|BG882067
EST:     ACTTATGCTGGTCTAAGAGCAAGGACAACCGGAGCTCCTCAGAATCATTG                         GTTTGGTCCCGCTGGCGACGCTAGAGGTGCAGGAATTGGAACACCGGAGGC
genomic: ACTTATGCTGGTCTAAGAGCAAGGACAACCGGAGCTCCTCAGAATCATTGgtaactcaat ... tctattacagGTTTGGTCCCGCTGGCGACGCTAGAGGTGCAGGAATTGGAACACCGGAGGC
EST: gi|9898827|gb|BE607795.1|BE607795
EST:     ACTTATGCTGGTCTAAGAGCAAGGACAACCGGAGCTCCTCAGAATCATTG                         GTTTGGTCCCGCTGGCGACGCTAGAGGTGCAGGAATTGGAACACCGGAGGC
genomic: ACTTATGCTGGTCTAAGAGCAAGGACAACCGGAGCTCCTCAGAATCATTGgtaactcaat ... tctattacagGTTTGGTCCCGCTGGCGACGCTAGAGGTGCAGGAATTGGAACACCGGAGGC
EST: gi|19346874|gb|BM891762.1|BM891762
EST:     ACTTATGCTGGTCTAAGAGCAAGGACAACCGGAGCTCCTCAGAATCATTG                         GTTTGGTCCCGCTGGCGACGCTAGAGGTGCAGGAATTGGAACACCGGAGGC
genomic: ACTTATGCTGGTCTAAGAGCAAGGACAACCGGAGCTCCTCAGAATCATTGgtaactcaat ... tctattacagGTTTGGTCCCGCTGGCGACGCTAGAGGTGCAGGAATTGGAACACCGGAGGC
EST: gi|27427456|gb|CA938976.1|CA938976
EST:     ACTTATGCTGGTCTAAGAGCAAGGACAACCGGAGCTCCTCAGAATCATTG                         GTTTGGTCCCGCTGGCGACGCTAGAGGTGCAGGAATTGGAACACCGGAGGC
genomic: ACTTATGCTGGTCTAAGAGCAAGGACAACCGGAGCTCCTCAGAATCATTGgtaactcaat ... tctattacagGTTTGGTCCCGCTGGCGACGCTAGAGGTGCAGGAATTGGAACACCGGAGGC
EST: gi|17020750|gb|BM091784.1|BM091784
EST:     ACTTATGCTGGTCTAAGAGCAAGGACAACCGGAGCTCCTCAGAATCATTG                         GTTTGGTCCCGCTGGCGACGCTAGAGGTGCAGGAATTGGAACACCGGAGGC
genomic: ACTTATGCTGGTCTAAGAGCAAGGACAACCGGAGCTCCTCAGAATCATTGgtaactcaat ... tctattacagGTTTGGTCCCGCTGGCGACGCTAGAGGTGCAGGAATTGGAACACCGGAGGC
EST: gi|7926202|gb|AW832228.1|AW832228
EST:     ACTTATGCTGGTCTAAGAGCAAGGACAACCGGAGCTCCTCAGAATCATTG                         GTTTGGTCCCGCTGGCGACGCTAGAGGTGCAGGAATTGGAACACCGGAGGC
genomic: ACTTATGCTGGTCTAAGAGCAAGGACAACCGGAGCTCCTCAGAATCATTGgtaactcaat ... tctattacagGTTTGGTCCCGCTGGCGACGCTAGAGGTGCAGGAATTGGAACACCGGAGGC
EST: gi|15203001|gb|BI425769.1|BI425769
EST:     ACTTATGCTGGTCTAAGAGCAAGGACAACCGGAGCTCCTCAGAATCATTG                         GTTTGGTCCCGCTGGCGACGCTAGAGGTGCAGGAATTGGAACACCGGAGGC
genomic: ACTTATGCTGGTCTAAGAGCAAGGACAACCGGAGCTCCTCAGAATCATTGgtaactcaat ... tctattacagGTTTGGTCCCGCTGGCGACGCTAGAGGTGCAGGAATTGGAACACCGGAGGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtacatgagtaagaaatgatgtttcgatttgttgaaaacaataattctattacagGTTTGGTCCCGCTGGCGACGCTAGAGGTGCAGGAATTGGAACACCGGAGGCTATAAAACTTGTATGGTCTTGCCACAGAGAAGTTATATATGATTTTGGA
                                            ttctatt  CT-rich tract
 ttgaaaacaataattc  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaactcaatatttttttgagtttgttttacttgtacatgagtaagaaatgatgtttcgatttgttgaaaacaataattctattacagGTTTGGTCCCGCTGGCGACGCTAGAGGTGCAGGAATTGGAACACCGGAGGCTATAAAACTTGTATGGTCTTGCCACAGAGAAGTTATATATGATTTTGGA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT