1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
gtaactcaatatttttttgagtttgttttacttgtacatgagtaagaaatgatgtttcgatttgttgaaaacaataattctattacagGTTTGGTCCCGCTGGCGACGCTAGAGGTGCAGGAATTGGAACACCGGAGGCTATAAAACTTGTATGGTCTTGCCACAGAGAAGTTATATATGATTTTGGA
species | Glycine max |
transcript | GLYMA05G01300.1 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: ACTTATGCTGGTCTAAGAGCAAGGACAACCGGAGCTCCTCAGAATCATTG GTTTGGTCCCGCTGGCGACGCTAGAGGTGCAGGAATTGGAACACCGGAGGCEST: gi|9898827|gb|BE607795.1|BE607795
genomic: ACTTATGCTGGTCTAAGAGCAAGGACAACCGGAGCTCCTCAGAATCATTGgtaactcaat ... tctattacagGTTTGGTCCCGCTGGCGACGCTAGAGGTGCAGGAATTGGAACACCGGAGGC
EST: ACTTATGCTGGTCTAAGAGCAAGGACAACCGGAGCTCCTCAGAATCATTG GTTTGGTCCCGCTGGCGACGCTAGAGGTGCAGGAATTGGAACACCGGAGGCEST: gi|19346874|gb|BM891762.1|BM891762
genomic: ACTTATGCTGGTCTAAGAGCAAGGACAACCGGAGCTCCTCAGAATCATTGgtaactcaat ... tctattacagGTTTGGTCCCGCTGGCGACGCTAGAGGTGCAGGAATTGGAACACCGGAGGC
EST: ACTTATGCTGGTCTAAGAGCAAGGACAACCGGAGCTCCTCAGAATCATTG GTTTGGTCCCGCTGGCGACGCTAGAGGTGCAGGAATTGGAACACCGGAGGCEST: gi|27427456|gb|CA938976.1|CA938976
genomic: ACTTATGCTGGTCTAAGAGCAAGGACAACCGGAGCTCCTCAGAATCATTGgtaactcaat ... tctattacagGTTTGGTCCCGCTGGCGACGCTAGAGGTGCAGGAATTGGAACACCGGAGGC
EST: ACTTATGCTGGTCTAAGAGCAAGGACAACCGGAGCTCCTCAGAATCATTG GTTTGGTCCCGCTGGCGACGCTAGAGGTGCAGGAATTGGAACACCGGAGGCEST: gi|17020750|gb|BM091784.1|BM091784
genomic: ACTTATGCTGGTCTAAGAGCAAGGACAACCGGAGCTCCTCAGAATCATTGgtaactcaat ... tctattacagGTTTGGTCCCGCTGGCGACGCTAGAGGTGCAGGAATTGGAACACCGGAGGC
EST: ACTTATGCTGGTCTAAGAGCAAGGACAACCGGAGCTCCTCAGAATCATTG GTTTGGTCCCGCTGGCGACGCTAGAGGTGCAGGAATTGGAACACCGGAGGCEST: gi|7926202|gb|AW832228.1|AW832228
genomic: ACTTATGCTGGTCTAAGAGCAAGGACAACCGGAGCTCCTCAGAATCATTGgtaactcaat ... tctattacagGTTTGGTCCCGCTGGCGACGCTAGAGGTGCAGGAATTGGAACACCGGAGGC
EST: ACTTATGCTGGTCTAAGAGCAAGGACAACCGGAGCTCCTCAGAATCATTG GTTTGGTCCCGCTGGCGACGCTAGAGGTGCAGGAATTGGAACACCGGAGGCEST: gi|15203001|gb|BI425769.1|BI425769
genomic: ACTTATGCTGGTCTAAGAGCAAGGACAACCGGAGCTCCTCAGAATCATTGgtaactcaat ... tctattacagGTTTGGTCCCGCTGGCGACGCTAGAGGTGCAGGAATTGGAACACCGGAGGC
EST: ACTTATGCTGGTCTAAGAGCAAGGACAACCGGAGCTCCTCAGAATCATTG GTTTGGTCCCGCTGGCGACGCTAGAGGTGCAGGAATTGGAACACCGGAGGC
genomic: ACTTATGCTGGTCTAAGAGCAAGGACAACCGGAGCTCCTCAGAATCATTGgtaactcaat ... tctattacagGTTTGGTCCCGCTGGCGACGCTAGAGGTGCAGGAATTGGAACACCGGAGGC
gtacatgagtaagaaatgatgtttcgatttgttgaaaacaataattctattacagGTTTGGTCCCGCTGGCGACGCTAGAGGTGCAGGAATTGGAACACCGGAGGCTATAAAACTTGTATGGTCTTGCCACAGAGAAGTTATATATGATTTTGGA
ttctatt CT-rich tract
ttgaaaacaataattc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaactcaatatttttttgagtttgttttacttgtacatgagtaagaaatgatgtttcgatttgttgaaaacaataattctattacagGTTTGGTCCCGCTGGCGACGCTAGAGGTGCAGGAATTGGAACACCGGAGGCTATAAAACTTGTATGGTCTTGCCACAGAGAAGTTATATATGATTTTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT