Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcagtcatttactccatgaccctaagacttgtctatgtgattttagtgctcctttatgccatggaatcgcgcacattttcctttttcaccaatggtgatccttattaattccttcctgttttgttttgcatgtccatgttacagCGTCAAGGTCATTCTTTTCTCTTTCAGCTTTTAGGGGAAGCAAGCCCTCCGAGTCAAAGTTTCATTAGTGCTATGGGAACCTACCATTAATTTTGCCATC

Basic information

species Glycine max
transcript GLYMA04G40300.1
intron # 15
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G40300.1 (Glycine max), 3'ss of exon 15
lower sequence: Vv13s0067g00080.t01 (Vitis vinifera), 3'ss of exon 7
gtcagtcatttactccatgaccctaagacttgtctatgtgattttagtgctcctttatgccatggaatcgcgcacattttcctttttcaccaatggtgatccttattaattccttcctgttttgttttgcatgtccatgttacagCGTCAAGGTCATTCTTTTCTCTTTCAGCTTTTAGGGGAAGCAAGCCCTCCGAGTCAAAGTTTCATTAGTGCTATGGGAACCT----ACCATTAATTTTGCCATC
                                            |  ||| | |   |    |  |||      | || | ||  | ||   ||  | ||  | || |||   |||   | || | |  |||||   |||| ||||  ||||||||||||| ||||||||||| |||||||| || || ||    ||| | ||| ||||||| | | | ||  |  |    ||  | |   |||     
-------------------------------------------cttatgcacatccctagagta-aattcttttctttcttctaatacatgcatt-tcatggtcatcaatggattctgatattctctatcatgtttctgttccagCAACAAGGTCATTCTTCTCTCTTTCAGCGTTTAGGGGCAGTAAACCAAATGAGACGAAGCTTCATTAATTCAAAGGAGAATTCAAAACTGTAAGACTTGT----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208252514|gb|GE047884.1|GE047884
EST:     TCACAAGATGCAAGACGGGCGTGATTTAGGTGCTGGTTCAACCACAAGAG                         CGTCAAGGTCATTCTTTTCTCTTTCAGCTTTTAGGGGAAGCAAGCCCTCCG
genomic: TTACAAGATGCAAGACGGGCGTGATTTAGGTGCTGGTTCAACCACAAGAGgtcagtcatt ... catgttacagCGTCAAGGTCATTCTTTTCTCTTTCAGCTTTTAGGGGAAGCAAGCCCTCCG
EST: gi|19453668|gb|BM955078.1|BM955078
EST:     TTACAAGATGCAAGACGGGCGTGATTTAGGTGCTGGTTCAACCACAAGAG                         CGTCAAGGTCATTCTTTTCTCTTTCAGCTTTTAGGGGAAGCAAGCCCTCCG
genomic: TTACAAGATGCAAGACGGGCGTGATTTAGGTGCTGGTTCAACCACAAGAGgtcagtcatt ... catgttacagCGTCAAGGTCATTCTTTTCTCTTTCAGCTTTTAGGGGAAGCAAGCCCTCCG
EST: gi|20812825|gb|BQ297303.1|BQ297303
EST:     TTACAAGATGCAAGACGGGCGTGATTTAGGTGCTGGTTCAACCACAAGAG                         CGTCAAGGTCATTCTTTTCTCTTTCAGCTTTTAGGGGAAGCAAGCCCTCCG
genomic: TTACAAGATGCAAGACGGGCGTGATTTAGGTGCTGGTTCAACCACAAGAGgtcagtcatt ... catgttacagCGTCAAGGTCATTCTTTTCTCTTTCAGCTTTTAGGGGAAGCAAGCCCTCCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caatggtgatccttattaattccttcctgttttgttttgcatgtccatgttacagCGTCAAGGTCATTCTTTTCTCTTTCAGCTTTTAGGGGAAGCAAGCCCTCCGAGTCAAAGTTTCATTAGTGCTATGGGAACCTACCATTAATTTTGCCATC
             tattaat  putative branch site (score: 2)
            ttattaatt  TA-rich tract