1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
...ttttaagtggaggacaatcctcaccttacaagcttgttttgtagggggttgagttaggctcataactaacgttctaagaattctatttaaattttttcagGGACACACATTGTACATTGTTTGGGTATAAGGATAAGGACAAGAAGAAGCTTCCACCGAGGGTTACGTCAATGCAGAAACCACTTGCTATAGAAAAACCG
species | Glycine max |
transcript | GLYMA04G35870.1 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: CTGTTTCAAAAGCTTGAAGGGCGATTGAAGGAGATGACATGGGAATACTG GGACACACATTGTACATTGTTTGGGTATAAGGATAAGGACAAGAAGAAGCTEST: gi|13311298|gb|BG404949.1|BG404949
genomic: CTGTTTCAAAAGCTTGAAGGGCGATTGAAGGAGATGACATGGGAATACTGgtatagtgtt ... attttttcagGGACACACATTGTACATTGTTTGGGTATAAGGATAAGGACAAGAAGAAGCT
EST: CTGTTTCAAAAGCTTGAAGGGCGATTGAAGGAGATGACATGGGAATACTG GGACACACATTGTACATTGTTTGGGTATAAGGATAAGGACAAGAAGAAGCTEST: gi|21256821|gb|BQ453709.1|BQ453709
genomic: CTGTTTCAAAAGCTTGAAGGGCGATTGAAGGAGATGACATGGGAATACTGgtatagtgtt ... attttttcagGGACACACATTGTACATTGTTTGGGTATAAGGATAAGGACAAGAAGAAGCT
EST: CTGTTTCAAAAGCTTGAAGGGCGATTGAAGGAGATGACATGGGAATACTG GGACACACATTGTACATTGTTTGGGTATAAGGATAAGGACAAGAAGAAGCTEST: gi|9203797|gb|BE330021.1|BE330021
genomic: CTGTTTCAAAAGCTTGAAGGGCGATTGAAGGAGATGACATGGGAATACTGgtatagtgtt ... attttttcagGGACACACATTGTACATTGTTTGGGTATAAGGATAAGGACAAGAAGAAGCT
EST: CTGTTTCAAAAGCTTGAAGGGCGATTGAAGGAGATGACATGGGAATACTG GGACACACATTGTACATTGTTTGGGTATAAGGATAAGGACAAGAAGAAGCT
genomic: CTGTTTCAAAAGCTTGAAGGGCGATTGAAGGAGATGACATGGGAATACTGgtatagtgtt ... attttttcagGGACACACATTGTACATTGTTTGGGTATAAGGATAAGGACAAGAAGAAGCT
gggttgagttaggctcataactaacgttctaagaattctatttaaattttttcagGGACACACATTGTACATTGTTTGGGTATAAGGATAAGGACAAGAAGAAGCTTCCACCGAGGGTTACGTCAATGCAGAAACCACTTGCTATAGAAAAACCG
aactaac putative branch site (score: 1)
ttttttc putative PPT
ttctaagaattctatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttttaagtggaggacaatcctcaccttacaagcttgttttgtagggggttgagttaggctcataactaacgttctaagaattctatttaaattttttcagGGACACACATTGTACATTGTTTGGGTATAAGGATAAGGACAAGAAGAAGCTTCCACCGAGGGTTACGTCAATGCAGAAACCACTTGCTATAGAAAAACCG
- - - -tggagga
- - - - - - - - - cctcacc
- - - - - - - - - - - - - tacaagc
- - - - - - - - - - - - - - - - - - - - gtagggg