Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtctttttttagtaatagaaatgtctttattaccattcacttctggttatgggaaatatatatggtgctacttctgtctatttttaaaattagataatacttgtcccttcatatgttagtaaagaaatttcattttttttaaatatctgatctccgataaaatatgagtgtgaaatgtttccactttgtacagGATCTGCTGTTGGATTCAAGTTAGATAGTCTTTTAAAACTAACCGAAACTCGTGCTTCAAACAGTAAAATGACACTAATGCATTTTCTTTGCAAG

Basic information

species Glycine max
transcript GLYMA04G32990.1
intron # 15
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA04G32990.1 (Glycine max), 3'ss of exon 15
lower sequence: Vv17s0000g06640.t01 (Vitis vinifera), 3'ss of exon 13
gtatgtctttttttagtaatagaaatgtctttattaccattcacttctggttatgggaaatatatatggtgctacttctgtctatttttaaaattagataatact-tgtcccttcatatgttagt--aaagaaatttcattttttttaaatatctgatctccgataaaatatgagtgtgaaatgtttccactttgtacagGATCTGCTGTTGGATTCAAGTTAGATAGTCTTTTAAAACTAACCGAAACTCGTGCTTCAAACAGTAAAATGACACTAATGCATTTTCTTTGCAAG
                                                                                                 | | |  | |||   || |  ||||      |  ||| ||||    |     |  | |       |||   |        |  |    |||||  || |||||| ||||| |||||||||||||| || |||||||||||||| || || || ||||| || ||||| || |||||||| ||||||| |||||| |||
------------------------------------------------------------------------------------------------aacattgttgtgttttttta-gtgttgactggataaaaattcaaacatagcccacttttatgtgttgatgtgaagcatccattga---cttccaagttttacagGTTCTGCGGTTGGATTCAAGTTGGACAGTCTTTTAAAACTCACTGATACACGTGCCTCTAACAGCAAGATGACACTTATGCATTATCTTTGTAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaaatatctgatctccgataaaatatgagtgtgaaatgtttccactttgtacagGATCTGCTGTTGGATTCAAGTTAGATAGTCTTTTAAAACTAACCGAAACTCGTGCTTCAAACAGTAAAATGACACTAATGCATTTTCTTTGCAAG
      atctgat  putative branch site (score: 4)
                                       tttccacttt  putative PPT
                  ataaaatatga  TA-rich tract