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gtaatttgtatattctatttaatgttttggtttgttgcatttatttattatttattttttgagcttttcttttggttgtccaatcttagtcaagtgatttttaggtatcaatgtattattttgagatatttgcttctattagtccttgggtattttttcagGAAACACTGGTGGATCAAGTTGGGGTATCTCATCCATTTTTGGTGGAGGTGATAGCCATACGATTGTGAAGGAGAATGTAGCTAGTAAACCACATACTGA
species | Glycine max |
transcript | GLYMA04G16340.1 |
intron # | 15 |
splice site | 3' |
intron type | U2 |
EST: GGTGTCCATGCTGCATCAGATGCTGAAAAAGTTGTATCCTCTG GAAACACTGGTGGATCAAGTTGGGGTATCTCATCCATTTTTGGTGGAGGTGEST: gi|193617417|gb|FK568811.1|FK568811
genomic: GGTGTCCATGCTGCATCAGATGCTGAAAAAGTTGTATCCTCTGgtaatttgta ... attttttcagGAAACACTGGTGGATCAAGTTGGGGTATCTCATCCATTTTTGGTGGAGGTG
EST: GGTGTCCATGCTGCATCAGATGCTAGAAAAAGTTGTATCCTCTG GAAACACTGGTGGATCAAGTTGGGGTATCTCATCCATTTTTGGTGGAGGTGEST: gi|208137320|gb|GD935954.1|GD935954
genomic: GGTGTCCATGCTGCATCAGATGCT-GAAAAAGTTGTATCCTCTGgtaatttgta ... attttttcagGAAACACTGGTGGATCAAGTTGGGGTATCTCATCCATTTTTGGTGGAGGTG
EST: AAAAGTTGTATCCTCTG GAAACACTGGTGGATCAAGGTTGGGGTATCTCATCCATTTTTGGTGGAGGT
genomic: AAAAGTTGTATCCTCTGgtaatttgta ... attttttcagGAAACACTGGTGGATCAA-GTTGGGGTATCTCATCCATTTTTGGTGGAGGT
atcaatgtattattttgagatatttgcttctattagtccttgggtattttttcagGAAACACTGGTGGATCAAGTTGGGGTATCTCATCCATTTTTGGTGGAGGTGATAGCCATACGATTGTGAAGGAGAATGTAGCTAGTAAACCACATACTGA
tattttttc CT-rich tract
tattattttgagatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatttgtatattctatttaatgttttggtttgttgcatttatttattatttattttttgagcttttcttttggttgtccaatcttagtcaagtgatttttaggtatcaatgtattattttgagatatttgcttctattagtccttgggtattttttcagGAAACACTGGTGGATCAAGTTGGGGTATCTCATCCATTTTTGGTGGAGGTGATAGCCATACGATTGTGAAGGAGAATGTAGCTAGTAAACCACATACTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA